Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13431 120 7e-22 seq11821 100 6e-16 seq2604 98.7 2e-15 >seq13431 Length=1576 Score = 120 bits (132), Expect = 7e-22 Identities = 268/396 (68%), Gaps = 11/396 (3%) Strand=Plus/Plus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||| | || || || ||| | ||| |||| ||||| || || ||||||||||| ||||| Sbjct 316 TGGCCAGCTGCCCCACTTGTTGTTCTACGGACCTCCAGGCACGGGCAAGACGTCCACCAT 375 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGA 254110 ||||| ||| || || || || || | | || | ||| | | || Sbjct 376 TGTGGCGGTGGGGCGCCAGCTCTTCGGTCCGGACTTCCGCAAGAATGGCCGCTTCTTGGA 435 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 ||||||||| || || || || || | | || || ||||| ||| |||| | ||| | Sbjct 436 GCTGAACGCATCGGATGACCGAGGCATTAAGGTGGTGCGCGAGAAGGTCAAAAGCTTCGC 495 Query 254171 CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 | || | || | | ||| | ||| ||||| || ||| || | | || || Sbjct 496 CCAGGGTGCCATCAGCACCT-CCAGC--GGCCTCCCGCCCTTTAAGATCATTGTGCTCGA 552 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 ||||| ||| ||||||||| |||||| ||||| || || || || | |||||||| | Sbjct 553 TGAGGCCGACTCCATGACGGGCGACGCACAGTCGGCTCTGCGTCGTATGATGGAGAACTA 612 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCG 254348 |||| || ||||| || ||||| | || ||||| ||| ||| | |||| | || Sbjct 613 CTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTATGTGAGTCGCA--TCATTGAGCCT 670 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACC 254384 ||||||| || ||||||||||| || ||| ||||| Sbjct 671 GTGGCTTCCCGATGCGCCAAGTTCCGTTTC-GCACC 705 >seq11821 Length=1105 Score = 100 bits (110), Expect = 6e-16 Identities = 454/717 (63%), Gaps = 46/717 (6%) Strand=Plus/Minus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| ||| |||||| |||||||| | || |||| |||||||| || ||||| Sbjct 880 ATGTACGTCATCAAGCGCGACGGGCGTCAGGAGGACGTCAAGTTCGACAAGATTACGGCG 821 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGA--TCATGTGGCCATCG 248536 ||||||| |||||||| || || || | || ||| ||| || ||| | ||| Sbjct 820 CGCATCACCAAGCTCTGCTACGGGCTCAACCCGGACTACGTGGACGCCATCAAG--ATCT 763 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 ||||||| || | ||||||| ||| |||| ||||| || | ||| | ||| | | Sbjct 762 CCCAGAAGGTCGTGGCGGGCGTGTACCCCGGCGTAACCACCTCGGAATTAGACGAACTCG 703 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || ||||| || || | | | | | ||||| || | ||| ||||| | | Sbjct 702 CGGCCGAGACCGCCGCCTGCCAGAGCACTCAGCACCCGGATTTCTCTAAACTGGCGGCAA 643 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCAT---GG 248713 | ||||||||||| | || ||||| | || || || ||| ||| | ||| || Sbjct 642 GAATCGCCGTCTCTAACCTGCACAAGAACACCAACAAGGTGTTTAGCGACAACATCGAGG 583 Query 248714 CT-----------GACCTAC----------ATGCCTATGGG---ATGGTCGCCGATGACG 248749 | ||| || ||| ||| | | |||| ||||||| Sbjct 582 TTTTTCACAAGAACACCCACGAGAAGACGGGTGCAGATGCGCCCCTCATCGCTGATGACG 523 Query 248750 T---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 | | | | |||||| ||| |||| | || ||| || || || | ||| | Sbjct 522 TATACGAGATCGTCATGCAGCACAA---GGACGAGCTGAACTCGGCCATCATCCACGACC 466 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 || || || ||||| | ||||| || ||||| || ||| ||| ||| || Sbjct 465 GGGACTTTGATTACGACTACTTTGGGTTTAAAACTCTCGAGCGCGGGTACCTCTTCCGCG 406 Query 248867 TTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTC 248926 | | ||||| | ||||| || ||||| ||| | ||||| ||||| | || || | Sbjct 405 TAAACGGCAAAGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCC 346 Query 248927 ACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986 ||||| |||| | | || || ||||||||| ||| || | | | Sbjct 345 ACAAGAGCAACATTGCGGCCGCCCTGGAGACGTACGAGCTCATGTCGCAAATGTTTTTCA 286 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCG 249042 | |||||||| ||||| || || |||||||| || || | |||| ||| || Sbjct 285 CGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAA----CTGTCGTCT 230 Query 249043 TGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 ||||| || | ||||||||||||||||| | || |||||||| |||||| ||||| Sbjct 229 TGCTTCCTATTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACG-TTAAA 174 >seq2604 Length=2437 Score = 98.7 bits (108), Expect = 2e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||| |||| | ||||| |||||||||||||| ||||| || Sbjct 1601 ACACCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGC 1660 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | | | ||||| Sbjct 1661 GAGATCATGTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACA-CCCAG 1719 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | || |||| ||| ||||| |||| |||||||| Sbjct 1720 CGAGTACAGCAGACGGTCGGCCACGAACTCGATGTACT 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073255510335680