Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq7137 396 9e-106 seq1703 89.7 2e-13 >seq7137 Length=12292 Score = 396 bits (438), Expect = 9e-106 Identities = 1555/2387 (65%), Gaps = 95/2387 (4%) Strand=Plus/Plus Query 17239 CATTCGATTGCGCGCGCGAAGGTGCTCGATGTGATCTCGGCGGGGCCGATCGTGGGGCTG 17298 ||||| |||||| || |||||||| |||| | || | ||| | ||||| || Sbjct 7844 CATTCCATTGCGTATGCAAAGGTGCTAGATGCGGCATCCGAGGGTGATGTTGTGGGATTG 7903 Query 17299 GTGAATGGCCTGCAGTCGGTCTATCTCGACGGCACACCGATCCAGAACGCGGACGGTTCG 17358 || ||||| ||||| || | ||||||| |||| ||| | ||| | ||||| || Sbjct 7904 GTCAATGGTATGCAGAGCGTGTTTCTCGACAGCACGCCGCTTATCAACCCCGACGGGACG 7963 Query 17359 CTGAATTTCCAGAACTACACCGTCGACGTGCGGACGGGCACGCAGGATCAGGACTACATC 17418 ||||| |||||| || ||| |||||||| || |||||||| || |||| ||||| Sbjct 7964 GCCAATTTTCAGAACGTCAGCGTTGACGTGCGCACCGGCACGCAAGACCAGGCTTACATT 8023 Query 17419 CCGGGCTTTCCGGCCGTCGAGCGTGAGGCCGGCGTCGGCGTGCCGCTGACGTCCGACG-C 17477 || || || || | ||||| |||| | |||||||| ||||||| ||| ||| | Sbjct 8024 CCCGGATTCCCTTCGGTCGAAAGTGAAACATCTGTCGGCGTTACGCTGACATCC-ACGAC 8082 Query 17478 GCCGTGGGTGCGCCAGATCCAGAATACGCAACTGACCGCGGTGCGTGTGCGCTTCGGCG- 17536 || ||||| ||| |||| || | || ||| | ||||| || | | | |||| Sbjct 8083 CCCATGGGTCCGCGCGATCAGCAACGCCCAGCTGTCGGCGGTCCGCAT-CACGATGGCGG 8141 Query 17537 TGCCGGCGCTACAGCGTCAGG---ACACGTCAAATGGCAACATCACAGGCTATCGCGTCG 17593 | ||||| || ||||| ||||| || ||| ||||||| ||||| || ||| Sbjct 8142 TACCGGCACTCTC---TCAGGCGAACACGAGCAACGGCGACATCACCGGCTACCGAATCG 8198 Query 17594 ACTATGCGATCGACTTGTCGGTCGACGGCGGGTCGTATACGCAGGTGCTGGCCGGTGCGT 17653 | || |||||||| | ||||| | ||| || ||| | | || || | || | Sbjct 8199 AATACGCGATCGATCTTTCGGTTGCCGGTGGCGCGTTCCAGGAAGTCTTGTCTTCGGCAT 8258 Query 17654 TCGACGGCAAGACGACGTCGCTCTACGAGCGCTCGCATCGGATCGAGCTGCCGCGCG-CG 17712 ||||||| |||||||| ||| ||||| ||| || || || | |||| |||| || Sbjct 8259 TCGACGGGAAGACGACCTCGACTTACGAACGCAGCCACCGCGTCAACTTGCC-CGCGTCG 8317 Query 17713 AAAAACGGCTGGCTGATCCGT----GTGCGCCGTATCACGCCGAACGCGCACA-CGGCGA 17767 || ||||||| | || |||||||| ||||| |||||||| | | | || | Sbjct 8318 G----CGTCTGGCTGGACGGTAAGAGTGCGCCGAATCACCCCGAACGCAAATATCAGC-A 8372 Query 17768 CGATCGCCGACGCGATCAACATCGA-AGCGATCACCGAAATCATCGATCGGAAGCTTCGC 17826 ||||||| || ||| ||||| || ||| ||| |||| |||||||| |||||||||| Sbjct 8373 CGATCGCTGATACGACGAACATTGAGAGC-ATCGCCGAGATCATCGACGCGAAGCTTCGC 8431 Query 17827 TATCCGATGACGGCGCTCGTCGGCATGACGTTCGACGCACGTTCGTTCTCGAGCGTGCCG 17886 || |||| |||||||| || ||||| | | || || | |||| |||| | || Sbjct 8432 TACCCGAATACGGCGCTGGTAGGCATTCAGGTAGATGCGCAGCAGTTCAAGAGCATCCCT 8491 Query 17887 GTGCGTTCGTATCACGTGCGAGGGATGATCTTCCGTGTTCCGACAAATTACGATCCGGAG 17946 || |||| || || ||| ||| |||| || || | || || || || | Sbjct 8492 ACTCGGTCGTTCGACATGAAGGGGCGCATCATCCGCGTGCCATCGAACTATGACCCCGCC 8551 Query 17947 ACCCGCACGTATTCGGGCACTTGGGATGGCACGTTCAAGGCAGCATGGACGAACAATCCA 18006 || || ||||| || | ||||| || || |||||| | |||||||| ||||||| Sbjct 8552 ACGCGTGCGTATGTCGGATCGTGGGACGGTACTTTCAAGACGGCATGGACTGACAATCCG 8611 Query 18007 GCTTGGGTCTACTACGGCCTACTGCTCGACAAGCTCAACGGATTGGGCGACCGTGTCGAT 18066 || ||||| | || | | | || | | | | | ||| | ||| | || || || Sbjct 8612 GCATGGGTGTTTTATGACTTGGTGTTGCATCCTCGCTATGGACTCGGCCATCGGGTGAAT 8671 Query 18067 GCGTCGATGGTCGACAAGTGGGCGCTGTACGCAATCGCGCGTCACTGTGACGAGCTGGTA 18126 | | ||||||||||||| | |||||| ||||| | | || ||||| ||||| Sbjct 8672 GGCGCACAGGTCGACAAGTGGTCCCTGTACCAGATCGCACAGTATTGCGACGAACTGGTC 8731 Query 18127 TCGGACGGGAAGGGCGGCAAGGAGCCGCGCTTTACGTGCAACTGCGTGATTCAGACAAAG 18186 || || | || ||| | || |||||||| || ||||| ||| | ||| | Sbjct 8732 GACGATGGCGACGGAGGCCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCAGGAGCGG 8791 Query 18187 GCGGATGCGTTCAAGGTCGTGCAGGATATCGCAAGTGTCTTTCGCGGGATTTCGTATTGG 18246 || || || | |||||| |||||||| |||| | ||||||||||| || |||||||| Sbjct 8792 GCTGACGCCTACAAGGTGCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGCGTATTGG 8851 Query 18247 GGGGCCGGCTCCGTCGTCGCGTCGGCCGATATGCCGTCCGATCCGGTCTACCTGTACACG 18306 | | || ||| || || |||| ||||| ||||||||||||| | |||| Sbjct 8852 GCGAATGGAAACGTTGTAGCCGTATCCGACATGCCCGGCGATCCGGTCTACAGCTTCACG 8911 Query 18307 GCCGCGAACGTCGTCGGCGGTTCATTCAAGTACGTCGGCAGCGAGC-GCAAGACGCGCTA 18365 ||| |||||| ||| ||| |||| |||| ||| | ||||| | || | || | Sbjct 8912 AACGCCAACGTCATCGACGGGAAGTTCACGTACACCGGTA-CGAGCTGGAAAGCCCGTAA 8970 Query 18366 CACGGTCGCGCTCGTCAGCTACAACGATCCGACGAACCAGTACAAGCAGGCTGTCGAAGC 18425 ||||| ||| | || | | ||||||||| | || || ||| | ||||| Sbjct 8971 GACGGTTGCGTTGGTGACGTGGAACGATCCGGCCGACTTCTATAAGGCGAAGGTCGAGTA 9030 Query 18426 CGTGCAGGACGACGACGGGATCGCGCGATACGGCG-TCATCAAGACGGAGGTCACGGCGT 18484 ||| | || | || || ||||||| || |||| ||| | |||| ||| || |||| Sbjct 9031 CGTCGAAGATCAGGATGGAGTCGCGCGCTATGGCGTTCAAC-AGACCGAGACGACCGCGT 9089 Query 18485 TCGGCTGCACGTCGCAGGCGCAGGCGCACCGTCTCGGTCGGTGGCTGCTGCTGACGTCGC 18544 | ||||| || |||| ||||||||| || |||||| ||| ||| |||| | || Sbjct 9090 TTGGCTGTACAAGTCAGGGGCAGGCGCAACGCGTCGGTCACTGGACGCTCCTGA-GCAGC 9148 Query 18545 GGT-ACGAGACCGGGACGGTCTCGTT-TCAGGTCGGGCTCGACGGGACGCT-TTGTGCGC 18601 || ||||| | | | || ||||| ||| |||||||||| | | | | ||| ||| Sbjct 9149 CGTCTGGAGACGGAGTCCGTGTCGTTCTCA-ATCGGGCTCGAAGAGGCAATGGTGT-CGC 9206 Query 18602 CGGGACAGGTGATCGCCGTTGCCGACCCTAAGAAGGCCGGCCGCCGGATCGGCGGCCGTA 18661 |||| || ||| ||| || || | || || || || || ||||| || Sbjct 9207 CGGGTAGCGTCATCAGCGTCGCGGATAGCGCGCGCGCGGGTCGGCGCATTGGCGGACGAG 9266 Query 18662 TCCGCGCCGCAGCCGGCGAGACGATCACGCTCGACAAGG-CGCCGACTATCGCCGCCGGC 18720 | | || || ||| ||| || |||||||||| || | | |||||| ||| Sbjct 9267 TGAAATCGGCGGCTGGCACGACTGTCGTTCTCGACAAGGTCGACCA-GATCGCCCAGGGC 9325 Query 18721 GA-TCGTTTCACGGCGATCTTGCCGTCGGGCATCGC-GCAGGCGCGGGTGGTGAAGGCCG 18778 || || || |||| ||| |||| ||| ||| |||| | || ||| | ||| Sbjct 9326 GACGCGATT-ACGGTCATCCTGCCAAGTGGC-GCGCGGCAGACCCGCACCGTGCAATCCG 9383 Query 18779 TCAACGGTGACACGGTGACGCTTGCCGCGCGCTTCGACGCTGATCCGGT---GCCGGGCG 18835 | ||| || | || ||| || | || | | |||| || | || |||| | Sbjct 9384 TGGTCGGCAACGCAGTCACGGTTACGGC-CAACTGGACG--GAGGCCGTGCAGCCGCAAG 9440 Query 18836 CTGTGTGGATGGTCGAGAGCAACGAACTCG-CCGCACAGCAGTATCGCGTGGTGAGTGTG 18894 | || ||| | || |||||| ||| | | | | |||| || |||||| |||| | Sbjct 9441 CGGTTTGGGTTGTAGAGAGC-ACGCAGTTGAAAACTCAGCTGTTCCGCGTGCTGAGCATC 9499 Query 18895 CAGGAGAGCGACGACAACGGCCAGATCGTCTACACGA--TCAACGCGACACAGTATGAGC 18952 | || |||| || || || | || | ||||||| ||| | | | Sbjct 9500 TCGCAGGGCGA-----------AGGTCTTCAATGGGATGTGAACGCGATCCAGCACAATC 9548 Query 18953 CGGGCAAGTATGCGGCGATCGACGACGGCGCGCAGATCCAGCAACGGCCGATCACGATTG 19012 ||| |||||| ||||| |||||| |||| ||| | |||||||||||||||| | Sbjct 9549 CGGACAAGTACGCGGCTATCGACAGCGGCACGCGCTTGCAGCAACGGCCGATCAGTGTCA 9608 Query 19013 TTCCGCCTTCGGTACAGCCACCGCCGTCGAACGTACGCCTGTCGA--CGTACTCGGTAGT 19070 ||||||| || || ||||| ||| | | | || | || || |||| ||||| | Sbjct 9609 TTCCGCCGTCTGTCCAGCCGCCGGCCAAGGATGT-TGTGTG-GGACTCGTATTCGGTCAT 9666 Query 19071 CGATCAGGGCATTTCGAAAACGTCGATGGTGATCGCGTGGGATGCGGCGAACCACGCGAC 19130 || ||||||||| || ||| | || || |||| |||| || | |||| Sbjct 9667 CGCGCAGGGCATTGCGTCGACGACTGGCGTTATTAAGTGGACGCCGGCTGACAAGGCGAT 9726 Query 19131 GAGCTACGTCGCCGAATGGCGCAAGGACAACGGCGAGTGGGTGCGGGC--GCCGTCGACG 19188 |||| || ||| |||||| ||||||||||||||||| ||| |||| || Sbjct 9727 CGCATACGACGTCGATTGGCGCCGCGACAACGGCGAGTGGGTTAAGGCTGGCCG--CACT 9784 Query 19189 GGCGGTTTGCAG---GTTGAGGTGCCGGGCATCTATCAGGGCAAATACCTCGCGCGCGTG 19245 ||| | ||| ||||||||||| | || |||||| | ||||||||||| Sbjct 9785 GGC---TCCCAGAGCCTTGAGGTGCCGAATCTGTACGCGGGCAAGTTTGTCGCGCGCGTG 9841 Query 19246 CGCGCCGAAAACGCGCTCGGCGTGACGTCGATTCCGGCGTATGGCGTCGATACGCAGCTG 19305 || || ||||| | ||| | ||||| ||||| ||| | || ||| |||| Sbjct 9842 ACGGCTCTGAATGCGCTTGAGGTGCCCTCGATCCCGGCCTATTCGGCAGAGACGGTGCTG 9901 Query 19306 ACCGGGAAAACCACTCCGCCGCCGTCGGTCGTGTC---GCTGACCGCGGCGGGCATCGTG 19362 | || || || | || |||||| | |||| | |||| || |||| ||||| Sbjct 9902 AATGGTAAGACATCGCCTCCGCCGAC---CGTGACCAGCCTGATGGCAACGGGGATCGTC 9958 Query 19363 TACGGGATCGACCTGAAATGGGCGTTCCCGGGTGACGGCTCCGCCGGCGACACGCAGCGA 19422 | ||| || | | || |||| ||||| || | ||||| |||| |||| Sbjct 9959 TTCGGCATTCAGATCAACTGGGGCTTCCC----AACTGGTCCGC--ACGACGTCGAGCGC 10012 Query 19423 ACGGAGATCTGGTACAGCC-GCACGCCGA-ATCGCGACGACGCGATCAAGTTCTCGGATT 19480 || ||| ||||||| |||| | | ||| | ||| ||||| ||| | |||| | Sbjct 10013 ACCGAGGTCTGGTATAGCCAGACCAACGACCTGTTCACG--GCGATTAAGCTGGCGGACT 10070 Query 19481 TCGCGTTCCCGCAG-GCGTCGACGTCGT-ATCAGGGGCTCGCGGTCGGACAGGTGTTTTA 19538 |||| || |||||| | | || | | || ||||||||||| || | ||| || Sbjct 10071 TCGCATTTCCGCAGAACACCCACACCATGAT--GGGGCTCGCGGCAGGCGCGACGTTCTA 10128 Query 19539 TTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGGCCGTGGT 19585 ||||||||||| |||||||||| ||| || ||| ||||| | |||| Sbjct 10129 CTTCTGGGCGCGGCTGGTCGACAAGTCTGGAAACATCGGGGCATGGT 10175 Score = 82.4 bits (90), Expect = 3e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20191 CCGTTCGTCGTGCAGGGCGGGCAGGTGTTCTTGCGTCAGGCGCTGATCGGTGCGGGCTGG 20250 |||||||| | || ||||| || |||| | ||||| | ||||| | || ||| Sbjct 10667 CCGTTCGTGATTCAAGGCGGCCAAACGTTCATCAACCAGGCATTCATCGGCTCCGGTTGG 10726 Query 20251 ATCACGAACGCGATGATCGGCAGTTACATCCAGTCCGACAACTACATCGCGGGGCGGCAG 20310 ||||||||||| ||||||||| ||||| ||||| ||||||||| ||| || | | Sbjct 10727 ATCACGAACGCCATGATCGGCGACTACATTCAGTCGAACAACTACAGCGCCGGTCTTTTG 10786 Query 20311 GGGTGGCGATGGGACAAGTCCGG 20333 || ||||| | ||| ||||| || Sbjct 10787 GGTTGGCGTTTGGATAAGTCTGG 10809 >seq1703 Length=38420 Score = 89.7 bits (98), Expect = 2e-13 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 29014 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 29062 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37369 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 37417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170596737381450