Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq8443 111 3e-20 seq10078 95.1 2e-15 >seq8443 Length=9145 Score = 111 bits (122), Expect = 3e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 7365 TTGGTAGGCCGTGCGGGATTCGAACCTGCGACCAACGGATTAAAAGTCCGCTGCTCTACC 7424 Query 417 GACTGAGCTAACGACCCAA 435 ||||||||||||||||| Sbjct 7425 AGCTGAGCTAACGACCCAA 7443 >seq10078 Length=5346 Score = 95.1 bits (104), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||||| ||||| || |||||| |||||| ||||||||| |||||||||||||||| Sbjct 147 TTGGTGGGGCGTGAGTGACTCGAACACTCGACCTACGGATTAAGAGTCCGCTGCTCTACC 88 Query 417 GACTGAGCTAACGACCC 433 |||||||||||| ||| Sbjct 87 AACTGAGCTAACGCCCC 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100659591738900