Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2604 199 6e-46 seq22515 118 2e-21 >seq2604 Length=2437 Score = 199 bits (220), Expect = 6e-46 Identities = 581/872 (67%), Gaps = 46/872 (5%) Strand=Plus/Minus Query 125037 AAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGAT 125096 ||||| ||||||| || ||||||| ||| ||| | || ||| | |||||| | || Sbjct 2436 AAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGAC 2377 Query 125097 TGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 |||| || | |||| || | ||||| || || |||| | |||||||||| Sbjct 2376 TGGGCGAACC---TGACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTC 2320 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGA 125214 || | | ||| || ||||| ||||| || ||| | || || || ||| || || Sbjct 2319 GCTGCCAGCGACGGCATCGTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGC 2262 Query 125215 CCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGG 125274 | || |||| ||||| ||||| ||||| ||| || |||||| | ||||| | Sbjct 2261 AGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAG 2202 Query 125275 AAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAA-----CACAT 125329 | |||| || || ||||||| |||||| ||| || ||| | | ||| | Sbjct 2201 AGGTGTATTCGCTGCTCATTGACACGTACATCAAGGATGCG--ACGGAGAAGGACCACCT 2144 Query 125330 GCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCG 125389 ||| | || ||||| ||| | |||| | | || || || || |||| | | Sbjct 2143 GCTGCGT---GCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAA 2087 Query 125390 GTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 |||| ||| ||| ||| |||||| | || | ||| |||| ||||| || || | Sbjct 2086 GTGGTGCGACCCGCGAGT-GTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGG 2028 Query 125449 AGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 ||||||||||||| ||||| | ||| ||| ||||||| ||||||||||||||||| ||| Sbjct 2027 AGGGCATCTTCTTCTCGGGCTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTC 1969 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 ||||| || |||| | |||||| | || || ||||||||| | ||| ||| Sbjct 1968 ATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGAC 1909 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG-TGC---AGATCCAGCGATGA 125623 || || || ||| ||| ||| | || ||| ||| || ||| || Sbjct 1908 TTCGCGTGCCTCATGTACTCCAAG---CTGGTGAACAAGCTGCCGGAGAGCC-GCG-TGC 1854 Query 125624 AAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATC 125683 | | | || || ||| || |||| ||| || || ||||| | || || Sbjct 1853 A--------CGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTC 1802 Query 125684 CCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTG 125742 || || || ||| |||| |||||||||| ||| |||||| ||||||| ||||| | Sbjct 1801 GCTCCCTGTGGAGC-TGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCG 1743 Query 125743 TGGCAGATCGTCTACTGTACGAGTTGATTG-GCCGCAAGATTTACAACGCCAAGAATCCC 125801 |||| || ||||| |||||| | || || | || ||||| ||||||| ||||| || Sbjct 1742 TGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCG 1684 Query 125802 TTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTC 125861 || || | ||| || || || || |||| ||||||||||||||||||||| || Sbjct 1683 TTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTG 1624 Query 125862 AGCGAGTA--CAAACGCTACGGTGTCGGTGTC 125891 ||||||| | || || |||||| |||||| Sbjct 1623 GGCGAGTACTCGAAGGC--CGGTGTGGGTGTC 1594 >seq22515 Length=820 Score = 118 bits (130), Expect = 2e-21 Identities = 277/410 (68%), Gaps = 6/410 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| ||||||||| | || | || | ||||| ||| Sbjct 50 GGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTACACGGAC 109 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | | ||||| | |||||||| || || || | || || | ||||||| | Sbjct 110 ATGCACGCC-GACTACACTGGTCAGGGCGTGGACCAGCTCGCTGAGGTT-ATTGACAAGC 167 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | ||||||| ||| | |||||||| || ||| | Sbjct 168 TGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCA 227 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || || ||||| ||| |||| || ||||| ||| | ||| ||| | Sbjct 228 ATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTGGCCGACGGCGAG 286 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 287 TTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATC 346 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || | |||| |||| || || | | || ||||| | |||| Sbjct 347 GCCAGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTGGCGAG 406 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || || ||| ||||| || || ||||||||| | || || ||||||| Sbjct 407 TTTGTCCACGTTATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCC 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740715209582600