Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq12503 167 1e-36 seq12338 82.4 4e-11 >seq12503 Length=1973 Score = 167 bits (184), Expect = 1e-36 Identities = 337/498 (68%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 66838 CGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGA 66897 ||||| ||||||||| || ||| || | ||| || | ||||||||||| || ||||| || Sbjct 1802 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 1743 Query 66898 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66957 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 1742 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 1683 Query 66958 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 67017 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 1682 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 1623 Query 67018 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 67077 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 1622 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 1563 Query 67078 CATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGAC 67134 |||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 1562 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 1504 Query 67135 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGAC 67194 ||| | |||||| | ||| ||||| | || | | | || ||| | |||| Sbjct 1503 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGT 1449 Query 67195 CACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 67254 || |||| |||| ||| || | | |||||| || || | |||| | ||||||| Sbjct 1448 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 1389 Query 67255 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAA 67314 | || ||||| ||||| ||| |||||||||| || |||||| || | ||| Sbjct 1388 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 1329 Query 67315 GAACAAGCTGGCCCCGCC 67332 |||||| || ||| |||| Sbjct 1328 GAACAAACTTGCCTCGCC 1311 >seq12338 Length=2103 Score = 82.4 bits (90), Expect = 4e-11 Identities = 160/233 (69%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 67255 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAA 67314 ||| | || |||||| | | ||||| ||||| ||| ||||| || || |||||||| Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294 Query 67315 GAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCAT 67374 ||||||| || | |||||| |||| | || ||| | | | ||||| |||| || Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGCGATTTTCGACATTCTCTACGGTCAGGGTAT 354 Query 67375 CTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG--CCTGGTGAAGAAGTCG 67432 |||||| || | |||| || |||| |||| ||||| | | | || ||||| | Sbjct 355 CTCGCGCGAAGGCGAAATCATCGATCTGG--GTGTCAACGCGAAGATCGTCGAGAAGGCC 412 Query 67433 GGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAGGGCAAGCCCAAGGC 67485 || ||||||| || ||| | | |||| ||| ||||||||| ||| || Sbjct 413 GGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGC 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242744488272620