Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq13770 129 4e-25 >seq13770 Length=1484 Score = 129 bits (142), Expect = 4e-25 Identities = 152/203 (75%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 99366 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 99425 ||||| || ||||| |||||||||| |||||| || || || | || || || || || Sbjct 1101 GAACGCCACCCGCGTGGGCACGTTGGCCTTGATCAGACCGGTAATGACGTCGACCGACGG 1042 Query 99426 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 99485 |||||||||||||| | || |||||||| ||||| ||||||||||| || || ||| | Sbjct 1041 TCGCTGCGTCGCCAGAATCAGGTGAATGCCCGCCGCGCGCGCCTTCTGTGCAATCCGGGC 982 Query 99486 AAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCC 99543 || ||| | || ||| |||||| | | ||||||| || || || ||||| || Sbjct 981 GATCAGTT--CTTCGACC---TTCTTGCCGACGACCATCATCAGGTCGGCCAGTTCGTCG 927 Query 99544 ACCACTACCACGATGTAGGGGAG 99566 | ||| ||||||||||| || || Sbjct 926 ATCACGACCACGATGTACGGCAG 904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354482694583110