Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_005261.2
Length=137821
Score E
Sequences producing significant alignments: (Bits) Value
seq3352 89.7 5e-13
>seq3352
Length=2265
Score = 89.7 bits (98), Expect = 5e-13
Identities = 183/270 (68%), Gaps = 19/270 (7%)
Strand=Plus/Plus
Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603
|| ||||| ||| |||||||||||||||||||| | || |||| || ||||
Sbjct 1398 CGGACGGTAAGCACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAG 1457
Query 99604 CCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGT---AGATGTTC 99660
||||| || |||| | || | |||| | |||| | | ||||||||
Sbjct 1458 CCGTGGGTGGGGCGCGCAATGCCCACGTCGTTCAT------GGCCTCCTTGAAGATGTTC 1511
Query 99661 TGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGC 99720
| |||||||||||| ||| || ||| || ||| ||| ||| ||||| ||||||
Sbjct 1512 TTGAGGCTGGGCGGCGGCGGGACTCCGTGGCGCACCGAGAAACTCAGTCCGTGAGCCTGC 1571
Query 99721 CCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACGTCCTCG--GGCGC-- 99776
| | |||||| |||||||||||||| || || ||||||| ||| | |||||
Sbjct 1572 TGCGGCCCGTGGTACGGGTCCTGGCCCAGAATCACCACCTTGAGGTCGGAGAAGGCGCAG 1631
Query 99777 -CGCGTAGCGCGTCCACGCGAAGACGTCCG 99805
| || ||||| |||||| |||||||
Sbjct 1632 TCTCGCAGCGC-----CGCGAACACGTCCG 1656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440694540102600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |