Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_005284.1
Length=54865
Score E
Sequences producing significant alignments: (Bits) Value
seq7137 329 1e-85
seq1703 89.7 2e-13
>seq7137
Length=12292
Score = 329 bits (364), Expect = 1e-85
Identities = 852/1279 (67%), Gaps = 22/1279 (2%)
Strand=Plus/Plus
Query 16486 CCCGACAGCCTGCATTCGATTGCACGCGCGAAGGTGCTCGACGTGATCTCGGCGGGGCCC 16545
|| || ||| | ||||| ||||| || |||||||| || | | || | |||
Sbjct 7832 CCGGATAGCTTACATTCCATTGCGTATGCAAAGGTGCTAGATGCGGCATCCGAGGGTGAT 7891
Query 16546 ATCGTGGGGCTGGTGAATGGCCTGCAGTCGGTCTATCTCGACGGCACGCCGATCCAGAAC 16605
| ||||| |||| ||||| ||||| || | ||||||| |||||||| | |||
Sbjct 7892 GTTGTGGGATTGGTCAATGGTATGCAGAGCGTGTTTCTCGACAGCACGCCGCTTATCAAC 7951
Query 16606 GCGGACGGCTCGCTAAATTTCCAGAACTACACCGTCGACGCGCGAACCGGCACGCAGGAT 16665
| ||||| || ||||| |||||| || ||| |||| ||| ||||||||||| ||
Sbjct 7952 CCCGACGGGACGGCCAATTTTCAGAACGTCAGCGTTGACGTGCGCACCGGCACGCAAGAC 8011
Query 16666 CAGGACTACATCTCGGGTTTTCCGGCCGTCGAGCGTGAGGCCGGCGTCGGCGTGCCGCTG 16725
|||| ||||| | || || || | ||||| |||| | |||||||| |||||
Sbjct 8012 CAGGCTTACATTCCCGGATTCCCTTCGGTCGAAAGTGAAACATCTGTCGGCGTTACGCTG 8071
Query 16726 ACGTCCGACG-CGCCGTGGGTGCGCCAAATCCAGAATACGCAACTGACTGCGGTGCGCGT 16784
|| ||| ||| | || ||||| ||| ||| || | || ||| | ||||| ||| |
Sbjct 8072 ACATCC-ACGACCCCATGGGTCCGCGCGATCAGCAACGCCCAGCTGTCGGCGGTCCGCAT 8130
Query 16785 GCGCTTCGGTGTGCCGGCGCTACAGCGTCAGG---ACACGTCGAACGGCAATATCACGGG 16841
| | || ||||| || ||||| ||||| |||||| | ||||| ||
Sbjct 8131 CACGATGGCGGTACCGGC---ACTCTCTCAGGCGAACACGAGCAACGGCGACATCACCGG 8187
Query 16842 CTATCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGGTCGTATGCGCAGGTGCT 16901
||| || |||| || |||||||| | ||||| | ||| || ||| | | || |
Sbjct 8188 CTACCGAATCGAATACGCGATCGATCTTTCGGTTGCCGGTGGCGCGTTCCAGGAAGTCTT 8247
Query 16902 GGCCGGTGCGTTCGACGGCAAGACGACGTCGCTCTATGAGCGCTCGCATCGGATCGAGCT 16961
| | || |||||||| |||||||| ||| || || ||| || || || | |
Sbjct 8248 GTCTTCGGCATTCGACGGGAAGACGACCTCGACTTACGAACGCAGCCACCGCGTCAACTT 8307
Query 16962 GCCGCGCG-CAAAAAATGGTTGGTTGATCCGCGTGCGCCGCATCACGCCGAACGCGCACA 17020
||| |||| | ||| ||| | | | |||||||| ||||| |||||||| | |
Sbjct 8308 GCC-CGCGTCGGCGTCTGGCTGGACGGTAAGAGTGCGCCGAATCACCCCGAACGCAAATA 8366
Query 17021 -CGGCGACGATCGCCGACGCGATCAACGTCGAGGCGATTACCGAGATCATCGATCGGAAG 17079
| || |||||||| || ||| ||| | ||| || ||||||||||||| ||||
Sbjct 8367 TCAGC-ACGATCGCTGATACGACGAACATTGAGAGCATCGCCGAGATCATCGACGCGAAG 8425
Query 17080 CTCCGCTATCCGATGACGGCGCTTGTCGGTATGACGTTCGACGCACGTTCGTTCTCGAGC 17139
|| ||||| |||| |||||||| || || || | | || || | |||| ||||
Sbjct 8426 CTTCGCTACCCGAATACGGCGCTGGTAGGCATTCAGGTAGATGCGCAGCAGTTCAAGAGC 8485
Query 17140 GTGCCAGTGCGTTCGTATCACGTGCGAGGGATGATCTTCCGAGTCCCGACAAACTACGAC 17199
| || || |||| || || ||| ||| |||| || || | ||||| |||
Sbjct 8486 ATCCCTACTCGGTCGTTCGACATGAAGGGGCGCATCATCCGCGTGCCATCGAACTATGAC 8545
Query 17200 CCGGAGACGCGTACGTA-CTCGGGTACATGGGACGGTACGTTCAAGGCAGCATGGACGAA 17258
|| | |||||| |||| |||| | | ||||||||||| |||||| | |||||||| |
Sbjct 8546 CCCGCCACGCGTGCGTATGTCGGAT-CGTGGGACGGTACTTTCAAGACGGCATGGACTGA 8604
Query 17259 CAATCCGGCGTGGGTCTACTACGGCCTACTTCTCGACAAGCTCAACGGATTGGGTGACCG 17318
||||||||| ||||| | || | | | | | | | | | ||| | || | ||
Sbjct 8605 CAATCCGGCATGGGTGTTTTATGACTTGGTGTTGCATCCTCGCTATGGACTCGGCCATCG 8664
Query 17319 TGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAATCGCGCGTTACTGCGACGA 17378
|| ||| | |||||| |||||| | |||||| ||||| | || ||||||||
Sbjct 8665 GGTGAATGGCGCACAGGTCGACAAGTGGTCCCTGTACCAGATCGCACAGTATTGCGACGA 8724
Query 17379 ACTCGTGTCCGACGGGAAGGGCGGCAAGGAGCCGTGCTTCACCTGCAACTGCGTGCTTCA 17438
||| || ||| || | || ||| | || ||| ||||||||||||| ||| | ||
Sbjct 8725 ACTGGTCGACGATGGCGACGGAGGCCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCA 8784
Query 17439 GACGCGCGCGGACGCATTCAAGGTGGTACAGGATCTCGCGAGCGTCTTTCGCGGCATTTC 17498
| ||| || ||||| | ||||||| | ||||||||||||| ||||||||||| || |
Sbjct 8785 GGAGCGGGCTGACGCCTACAAGGTGCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGC 8844
Query 17499 GTACTGGGGCGCCGGGTCGGTGGTCGCGTCGGCCGATATGCCGTCCGATCCGGTCTACCT 17558
||| |||| || || || || |||| ||||| |||||||||||||
Sbjct 8845 GTATTGGGCGAATGGAAACGTTGTAGCCGTATCCGACATGCCCGGCGATCCGGTCTACAG 8904
Query 17559 GTACACGGCCGCGAATGTCGTCGGTGGTTCATTCAAGTACGTCGGCAGCGAAC-GCAAGA 17617
| |||| ||| || ||| ||| || |||| |||| ||| | ||| | | ||
Sbjct 8905 CTTCACGAACGCCAACGTCATCGACGGGAAGTTCACGTACACCGGTA-CGAGCTGGAAAG 8963
Query 17618 CGCGTTACACGGTCGCGCTCGTCAGCTACAACGATCCGACGAACCAGTACAAG--CAAGC 17675
| ||| | ||||| ||| | || | | ||||||||| | || || ||| |||
Sbjct 8964 CCCGTAAGACGGTTGCGTTGGTGACGTGGAACGATCCGGCCGACTTCTATAAGGCGAAG- 9022
Query 17676 TGTCGAGCCCGTGCAGGACGACGACGGGATCGCGCGATATGGCG-TCATCAAGACGGAGG 17734
|||||| ||| | || | || || ||||||| ||||||| ||| | |||| |||
Sbjct 9023 -GTCGAGTACGTCGAAGATCAGGATGGAGTCGCGCGCTATGGCGTTCAAC-AGACCGAGA 9080
Query 17735 TCACGGCGTTCGGCTGCAC 17753
|| ||||| ||||| ||
Sbjct 9081 CGACCGCGTTTGGCTGTAC 9099
Score = 122 bits (134), Expect = 3e-23
Identities = 439/667 (66%), Gaps = 36/667 (5%)
Strand=Plus/Plus
Query 18193 AACGCGACGCAGTACGAGCCGGGGAAGTACGCGGCGATCGACGACGGCGCACAGATTCAG 18252
||||||| ||| || | |||| ||||||||||| |||||| |||| | | | |||
Sbjct 9530 AACGCGATCCAGCACAATCCGGACAAGTACGCGGCTATCGACAGCGGCACGCGCTTGCAG 9589
Query 18253 CAACGGCCGATCACGATCGTTCCGCCATCGGTGCAGCCGCCGCCGTCGAACGTCC---GC 18309
||||||||||||| || ||||||| || || ||||||||| | | | || |
Sbjct 9590 CAACGGCCGATCAGTGTCATTCCGCCGTCTGTCCAGCCGCCGGCCAAGGATGTTGTGTGG 9649
Query 18310 CTCTCGACATACTCGGTGGTCGATCAGGGTATTTCGAAAACAACGATGGTGATCGCGTGG 18369
|||| || ||||| ||| ||||| ||| || || || || || ||||
Sbjct 9650 GACTCG---TATTCGGTCATCGCGCAGGGCATTGCGTCGACGACTGGCGTTATTAAGTGG 9706
Query 18370 GATGCAGCGAACCACGCGACAAGCTACGTCGTCGAATGGCGGAAGGATAACGGCGAGTGG 18429
| || || | |||| |||| |||||| ||||| || ||||||||||||
Sbjct 9707 ACGCCGGCTGACAAGGCGATCGCATACGACGTCGATTGGCGCCGCGACAACGGCGAGTGG 9766
Query 18430 GTGAAGG-TGCCGTCGACAGGCGGCCTGCAGGTCGAGGTGCCGGGAATC--TATCAGGGC 18486
|| |||| || | | || ||| || | | |||||||| ||||| || ||||
Sbjct 9767 GTTAAGGCTGGCCGC-ACTGGCTCCCAGAGCCTTGAGGTGCC--GAATCTGTACGCGGGC 9823
Query 18487 AAGTACCTCGCGCGGGTGCGCGCCGAGAACGCGCTCGGCGTGACGTCGATTCCGGCGTA- 18545
|||| ||||||| ||| || ||| ||||| | ||| | ||||| ||||| ||
Sbjct 9824 AAGTTTGTCGCGCGCGTGACGGCTCTGAATGCGCTTGAGGTGCCCTCGATCCCGGCCTAT 9883
Query 18546 -CGGCGTCGATACGCAACTGACCGGGAAAACCACTCCGCCGCCGTCGGTCGTGTC---GC 18601
|||| || ||| |||| || || || | || |||||| | |||| | |
Sbjct 9884 TCGGC--AGAGACGGTGCTGAATGGTAAGACATCGCCTCCGCCGAC---CGTGACCAGCC 9938
Query 18602 TGACTGCGGCGGGCATCGTGTACGGGATCGATCTGAAATGGGCGTTTCCGGGTGACGGAT 18661
||| || |||| ||||| | ||| || | | || |||| | |||| || | |
Sbjct 9939 TGATGGCAACGGGGATCGTCTTCGGCATTCAGATCAACTGGG-GCTTCC---CAACTGGT 9994
Query 18662 CCGCTGGCGACACGCAGCGAACGGAGATCTGGTACAGCC-GCACGCCGA-ATCGCGACGA 18719
|||| |||| |||| || ||| ||||||| |||| | | ||| | |||
Sbjct 9995 CCGC--ACGACGTCGAGCGCACCGAGGTCTGGTATAGCCAGACCAACGACCTGTTCACG- 10051
Query 18720 CGCGACCAAGTTCTCCGACTTCGCGTATCCGCAG-GCGTCGACGTCGT-ATCAGGGGCTC 18777
|||| ||| | | |||||||| | ||||||| | | || | | || |||||||
Sbjct 10052 -GCGATTAAGCTGGCGGACTTCGCATTTCCGCAGAACACCCACACCATGAT--GGGGCTC 10108
Query 18778 GCGGTCGGGCAGGTGTTTTATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGG 18837
|||| || | ||| || ||||||||||| |||||||||| ||| || ||| |||||
Sbjct 10109 GCGGCAGGCGCGACGTTCTACTTCTGGGCGCGGCTGGTCGACAAGTCTGGAAACATCGGG 10168
Query 18838 CCGTGGT 18844
| ||||
Sbjct 10169 GCATGGT 10175
Score = 96.9 bits (106), Expect = 1e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 19450 CCGTTCGTTGTGCAAGGCGGGCAAGTGTTTTTGCGGCAGGCGCTGATCGGTGCGGGCTGG 19509
|||||||| | |||||||| ||| ||| | ||||| | ||||| | || |||
Sbjct 10667 CCGTTCGTGATTCAAGGCGGCCAAACGTTCATCAACCAGGCATTCATCGGCTCCGGTTGG 10726
Query 19510 ATCACGAACGCGATGATCGGCAACTATATCCAGTCCGACAACTACATCGCGGGGCGGCAG 19569
||||||||||| ||||||||| |||| || ||||| ||||||||| ||| || | |
Sbjct 10727 ATCACGAACGCCATGATCGGCGACTACATTCAGTCGAACAACTACAGCGCCGGTCTTTTG 10786
Query 19570 GGTTGGCGGTGGGACAAGTCCGG 19592
|||||||| | ||| ||||| ||
Sbjct 10787 GGTTGGCGTTTGGATAAGTCTGG 10809
>seq1703
Length=38420
Score = 89.7 bits (98), Expect = 2e-13
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 28275 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 28323
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37369 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 37417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175369031975490
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