Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq7137 329 1e-85 seq1703 89.7 2e-13 >seq7137 Length=12292 Score = 329 bits (364), Expect = 1e-85 Identities = 852/1279 (67%), Gaps = 22/1279 (2%) Strand=Plus/Plus Query 16486 CCCGACAGCCTGCATTCGATTGCACGCGCGAAGGTGCTCGACGTGATCTCGGCGGGGCCC 16545 || || ||| | ||||| ||||| || |||||||| || | | || | ||| Sbjct 7832 CCGGATAGCTTACATTCCATTGCGTATGCAAAGGTGCTAGATGCGGCATCCGAGGGTGAT 7891 Query 16546 ATCGTGGGGCTGGTGAATGGCCTGCAGTCGGTCTATCTCGACGGCACGCCGATCCAGAAC 16605 | ||||| |||| ||||| ||||| || | ||||||| |||||||| | ||| Sbjct 7892 GTTGTGGGATTGGTCAATGGTATGCAGAGCGTGTTTCTCGACAGCACGCCGCTTATCAAC 7951 Query 16606 GCGGACGGCTCGCTAAATTTCCAGAACTACACCGTCGACGCGCGAACCGGCACGCAGGAT 16665 | ||||| || ||||| |||||| || ||| |||| ||| ||||||||||| || Sbjct 7952 CCCGACGGGACGGCCAATTTTCAGAACGTCAGCGTTGACGTGCGCACCGGCACGCAAGAC 8011 Query 16666 CAGGACTACATCTCGGGTTTTCCGGCCGTCGAGCGTGAGGCCGGCGTCGGCGTGCCGCTG 16725 |||| ||||| | || || || | ||||| |||| | |||||||| ||||| Sbjct 8012 CAGGCTTACATTCCCGGATTCCCTTCGGTCGAAAGTGAAACATCTGTCGGCGTTACGCTG 8071 Query 16726 ACGTCCGACG-CGCCGTGGGTGCGCCAAATCCAGAATACGCAACTGACTGCGGTGCGCGT 16784 || ||| ||| | || ||||| ||| ||| || | || ||| | ||||| ||| | Sbjct 8072 ACATCC-ACGACCCCATGGGTCCGCGCGATCAGCAACGCCCAGCTGTCGGCGGTCCGCAT 8130 Query 16785 GCGCTTCGGTGTGCCGGCGCTACAGCGTCAGG---ACACGTCGAACGGCAATATCACGGG 16841 | | || ||||| || ||||| ||||| |||||| | ||||| || Sbjct 8131 CACGATGGCGGTACCGGC---ACTCTCTCAGGCGAACACGAGCAACGGCGACATCACCGG 8187 Query 16842 CTATCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGGTCGTATGCGCAGGTGCT 16901 ||| || |||| || |||||||| | ||||| | ||| || ||| | | || | Sbjct 8188 CTACCGAATCGAATACGCGATCGATCTTTCGGTTGCCGGTGGCGCGTTCCAGGAAGTCTT 8247 Query 16902 GGCCGGTGCGTTCGACGGCAAGACGACGTCGCTCTATGAGCGCTCGCATCGGATCGAGCT 16961 | | || |||||||| |||||||| ||| || || ||| || || || | | Sbjct 8248 GTCTTCGGCATTCGACGGGAAGACGACCTCGACTTACGAACGCAGCCACCGCGTCAACTT 8307 Query 16962 GCCGCGCG-CAAAAAATGGTTGGTTGATCCGCGTGCGCCGCATCACGCCGAACGCGCACA 17020 ||| |||| | ||| ||| | | | |||||||| ||||| |||||||| | | Sbjct 8308 GCC-CGCGTCGGCGTCTGGCTGGACGGTAAGAGTGCGCCGAATCACCCCGAACGCAAATA 8366 Query 17021 -CGGCGACGATCGCCGACGCGATCAACGTCGAGGCGATTACCGAGATCATCGATCGGAAG 17079 | || |||||||| || ||| ||| | ||| || ||||||||||||| |||| Sbjct 8367 TCAGC-ACGATCGCTGATACGACGAACATTGAGAGCATCGCCGAGATCATCGACGCGAAG 8425 Query 17080 CTCCGCTATCCGATGACGGCGCTTGTCGGTATGACGTTCGACGCACGTTCGTTCTCGAGC 17139 || ||||| |||| |||||||| || || || | | || || | |||| |||| Sbjct 8426 CTTCGCTACCCGAATACGGCGCTGGTAGGCATTCAGGTAGATGCGCAGCAGTTCAAGAGC 8485 Query 17140 GTGCCAGTGCGTTCGTATCACGTGCGAGGGATGATCTTCCGAGTCCCGACAAACTACGAC 17199 | || || |||| || || ||| ||| |||| || || | ||||| ||| Sbjct 8486 ATCCCTACTCGGTCGTTCGACATGAAGGGGCGCATCATCCGCGTGCCATCGAACTATGAC 8545 Query 17200 CCGGAGACGCGTACGTA-CTCGGGTACATGGGACGGTACGTTCAAGGCAGCATGGACGAA 17258 || | |||||| |||| |||| | | ||||||||||| |||||| | |||||||| | Sbjct 8546 CCCGCCACGCGTGCGTATGTCGGAT-CGTGGGACGGTACTTTCAAGACGGCATGGACTGA 8604 Query 17259 CAATCCGGCGTGGGTCTACTACGGCCTACTTCTCGACAAGCTCAACGGATTGGGTGACCG 17318 ||||||||| ||||| | || | | | | | | | | | ||| | || | || Sbjct 8605 CAATCCGGCATGGGTGTTTTATGACTTGGTGTTGCATCCTCGCTATGGACTCGGCCATCG 8664 Query 17319 TGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAATCGCGCGTTACTGCGACGA 17378 || ||| | |||||| |||||| | |||||| ||||| | || |||||||| Sbjct 8665 GGTGAATGGCGCACAGGTCGACAAGTGGTCCCTGTACCAGATCGCACAGTATTGCGACGA 8724 Query 17379 ACTCGTGTCCGACGGGAAGGGCGGCAAGGAGCCGTGCTTCACCTGCAACTGCGTGCTTCA 17438 ||| || ||| || | || ||| | || ||| ||||||||||||| ||| | || Sbjct 8725 ACTGGTCGACGATGGCGACGGAGGCCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCA 8784 Query 17439 GACGCGCGCGGACGCATTCAAGGTGGTACAGGATCTCGCGAGCGTCTTTCGCGGCATTTC 17498 | ||| || ||||| | ||||||| | ||||||||||||| ||||||||||| || | Sbjct 8785 GGAGCGGGCTGACGCCTACAAGGTGCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGC 8844 Query 17499 GTACTGGGGCGCCGGGTCGGTGGTCGCGTCGGCCGATATGCCGTCCGATCCGGTCTACCT 17558 ||| |||| || || || || |||| ||||| ||||||||||||| Sbjct 8845 GTATTGGGCGAATGGAAACGTTGTAGCCGTATCCGACATGCCCGGCGATCCGGTCTACAG 8904 Query 17559 GTACACGGCCGCGAATGTCGTCGGTGGTTCATTCAAGTACGTCGGCAGCGAAC-GCAAGA 17617 | |||| ||| || ||| ||| || |||| |||| ||| | ||| | | || Sbjct 8905 CTTCACGAACGCCAACGTCATCGACGGGAAGTTCACGTACACCGGTA-CGAGCTGGAAAG 8963 Query 17618 CGCGTTACACGGTCGCGCTCGTCAGCTACAACGATCCGACGAACCAGTACAAG--CAAGC 17675 | ||| | ||||| ||| | || | | ||||||||| | || || ||| ||| Sbjct 8964 CCCGTAAGACGGTTGCGTTGGTGACGTGGAACGATCCGGCCGACTTCTATAAGGCGAAG- 9022 Query 17676 TGTCGAGCCCGTGCAGGACGACGACGGGATCGCGCGATATGGCG-TCATCAAGACGGAGG 17734 |||||| ||| | || | || || ||||||| ||||||| ||| | |||| ||| Sbjct 9023 -GTCGAGTACGTCGAAGATCAGGATGGAGTCGCGCGCTATGGCGTTCAAC-AGACCGAGA 9080 Query 17735 TCACGGCGTTCGGCTGCAC 17753 || ||||| ||||| || Sbjct 9081 CGACCGCGTTTGGCTGTAC 9099 Score = 122 bits (134), Expect = 3e-23 Identities = 439/667 (66%), Gaps = 36/667 (5%) Strand=Plus/Plus Query 18193 AACGCGACGCAGTACGAGCCGGGGAAGTACGCGGCGATCGACGACGGCGCACAGATTCAG 18252 ||||||| ||| || | |||| ||||||||||| |||||| |||| | | | ||| Sbjct 9530 AACGCGATCCAGCACAATCCGGACAAGTACGCGGCTATCGACAGCGGCACGCGCTTGCAG 9589 Query 18253 CAACGGCCGATCACGATCGTTCCGCCATCGGTGCAGCCGCCGCCGTCGAACGTCC---GC 18309 ||||||||||||| || ||||||| || || ||||||||| | | | || | Sbjct 9590 CAACGGCCGATCAGTGTCATTCCGCCGTCTGTCCAGCCGCCGGCCAAGGATGTTGTGTGG 9649 Query 18310 CTCTCGACATACTCGGTGGTCGATCAGGGTATTTCGAAAACAACGATGGTGATCGCGTGG 18369 |||| || ||||| ||| ||||| ||| || || || || || |||| Sbjct 9650 GACTCG---TATTCGGTCATCGCGCAGGGCATTGCGTCGACGACTGGCGTTATTAAGTGG 9706 Query 18370 GATGCAGCGAACCACGCGACAAGCTACGTCGTCGAATGGCGGAAGGATAACGGCGAGTGG 18429 | || || | |||| |||| |||||| ||||| || |||||||||||| Sbjct 9707 ACGCCGGCTGACAAGGCGATCGCATACGACGTCGATTGGCGCCGCGACAACGGCGAGTGG 9766 Query 18430 GTGAAGG-TGCCGTCGACAGGCGGCCTGCAGGTCGAGGTGCCGGGAATC--TATCAGGGC 18486 || |||| || | | || ||| || | | |||||||| ||||| || |||| Sbjct 9767 GTTAAGGCTGGCCGC-ACTGGCTCCCAGAGCCTTGAGGTGCC--GAATCTGTACGCGGGC 9823 Query 18487 AAGTACCTCGCGCGGGTGCGCGCCGAGAACGCGCTCGGCGTGACGTCGATTCCGGCGTA- 18545 |||| ||||||| ||| || ||| ||||| | ||| | ||||| ||||| || Sbjct 9824 AAGTTTGTCGCGCGCGTGACGGCTCTGAATGCGCTTGAGGTGCCCTCGATCCCGGCCTAT 9883 Query 18546 -CGGCGTCGATACGCAACTGACCGGGAAAACCACTCCGCCGCCGTCGGTCGTGTC---GC 18601 |||| || ||| |||| || || || | || |||||| | |||| | | Sbjct 9884 TCGGC--AGAGACGGTGCTGAATGGTAAGACATCGCCTCCGCCGAC---CGTGACCAGCC 9938 Query 18602 TGACTGCGGCGGGCATCGTGTACGGGATCGATCTGAAATGGGCGTTTCCGGGTGACGGAT 18661 ||| || |||| ||||| | ||| || | | || |||| | |||| || | | Sbjct 9939 TGATGGCAACGGGGATCGTCTTCGGCATTCAGATCAACTGGG-GCTTCC---CAACTGGT 9994 Query 18662 CCGCTGGCGACACGCAGCGAACGGAGATCTGGTACAGCC-GCACGCCGA-ATCGCGACGA 18719 |||| |||| |||| || ||| ||||||| |||| | | ||| | ||| Sbjct 9995 CCGC--ACGACGTCGAGCGCACCGAGGTCTGGTATAGCCAGACCAACGACCTGTTCACG- 10051 Query 18720 CGCGACCAAGTTCTCCGACTTCGCGTATCCGCAG-GCGTCGACGTCGT-ATCAGGGGCTC 18777 |||| ||| | | |||||||| | ||||||| | | || | | || ||||||| Sbjct 10052 -GCGATTAAGCTGGCGGACTTCGCATTTCCGCAGAACACCCACACCATGAT--GGGGCTC 10108 Query 18778 GCGGTCGGGCAGGTGTTTTATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGG 18837 |||| || | ||| || ||||||||||| |||||||||| ||| || ||| ||||| Sbjct 10109 GCGGCAGGCGCGACGTTCTACTTCTGGGCGCGGCTGGTCGACAAGTCTGGAAACATCGGG 10168 Query 18838 CCGTGGT 18844 | |||| Sbjct 10169 GCATGGT 10175 Score = 96.9 bits (106), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19450 CCGTTCGTTGTGCAAGGCGGGCAAGTGTTTTTGCGGCAGGCGCTGATCGGTGCGGGCTGG 19509 |||||||| | |||||||| ||| ||| | ||||| | ||||| | || ||| Sbjct 10667 CCGTTCGTGATTCAAGGCGGCCAAACGTTCATCAACCAGGCATTCATCGGCTCCGGTTGG 10726 Query 19510 ATCACGAACGCGATGATCGGCAACTATATCCAGTCCGACAACTACATCGCGGGGCGGCAG 19569 ||||||||||| ||||||||| |||| || ||||| ||||||||| ||| || | | Sbjct 10727 ATCACGAACGCCATGATCGGCGACTACATTCAGTCGAACAACTACAGCGCCGGTCTTTTG 10786 Query 19570 GGTTGGCGGTGGGACAAGTCCGG 19592 |||||||| | ||| ||||| || Sbjct 10787 GGTTGGCGTTTGGATAAGTCTGG 10809 >seq1703 Length=38420 Score = 89.7 bits (98), Expect = 2e-13 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 28275 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 28323 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37369 TGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 37417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175369031975490