Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq22515 129 4e-25 seq25497 105 5e-18 >seq22515 Length=820 Score = 129 bits (142), Expect = 4e-25 Identities = 296/441 (67%), Gaps = 21/441 (5%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || || || | || || ||||| || || || | | |||| Sbjct 471 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 412 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | || || | || | || |||| ||| || | |||| Sbjct 411 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 352 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||| || || || || | |||||||| || || | |||||| | ||| || Sbjct 351 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCC-GAGCGCTGGTACATCTGGCA 293 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| ||||| |||||| ||||| || | ||| |||||| || || || || Sbjct 292 GGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 233 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCT-TCTGGG 25707 | || || || || ||||| || ||| | ||| | | ||| || | Sbjct 232 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGAT 177 Query 25708 TTGTCCC-----TGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 25762 |||| | || || | || | | | ||||| ||||| ||| || | || Sbjct 176 TTGTGCGCAGCTTGTCAATAACCTCAGCG------AGCTGGTCCACGCCCTGACCAGTGT 123 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 |||| || |||||||||||||| |||||| |||| | ||||||||| ||||| |||| Sbjct 122 AGTCGGCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCG 63 Query 25823 GTCCTAGGTCTCCATCTTCCC 25843 |||| ||||| ||| |||||| Sbjct 62 GTCCGAGGTCGCCAACTTCCC 42 >seq25497 Length=733 Score = 105 bits (116), Expect = 5e-18 Identities = 173/244 (71%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 25401 GGCTCCCTCTCGAGCTGAGTCTTCAGCG---GTTCTACGTGATCCAGGTAGACGTGAGCG 25457 ||||| | | | ||||| |||| ||| |||| | ||| | | || | ||| || Sbjct 317 GGCTCGCGCGCCAGCTG---CTTCTGCGCTTGTTCGATGTGGTTCGAATACAGGTGCGCA 373 Query 25458 TCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTAC 25517 || ||||| || || || || || ||| ||| |||||||| || | || ||||| | Sbjct 374 TCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGATCATATGG 433 Query 25518 GTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCT 25577 ||||| || |||||||||||| || || || | |||| || | | ||||| | Sbjct 434 GTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATAT-CGCCCGAGCG 492 Query 25578 CTGGTAGAGCTGACACGAGAGCTCTTCG-TCGCTCACGTAAAACTGACACATGGTGTAGC 25636 |||||| ||||| |||||||| | | || |||| |||||| ||||| ||||||||| || Sbjct 493 CTGGTACAGCTGGCACGAGAGTTTTCCGTTCGC-CACGTAGAACTGGAACATGGTGTGGC 551 Query 25637 ACGG 25640 |||| Sbjct 552 ACGG 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339983659568355