Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq6108 122 2e-23 >seq6108 Length=15222 Score = 122 bits (134), Expect = 2e-23 Identities = 363/549 (66%), Gaps = 21/549 (4%) Strand=Plus/Plus Query 22271 TTCACGATCAGCGACGGTGGCGCGCAGCAGGCGATCGGATTTCTCGTCGGCCTGTTCGGT 22330 ||| |||||| |||| ||||| ||||||||| | || || | | || ||||||||| Sbjct 22 TTCGCGATCACGGACGCCGGCGCTCAGCAGGCGTTTGGCTTCTTGATGGGGCTGTTCGGT 81 Query 22331 CTGGCAATCACAAAAGAGCTGTTCAAGGAAATCAACACAGCCGACATCATCGGGGCCCTG 22390 || || | | || || | ||||| ||||||||| | |||| | ||||||| || Sbjct 82 CTTGCGCTAGCGAAGGAAGTCTTCAAAGAAATCAAC-GATGCGACCTGGTCGGGGCTCTC 140 Query 22391 AAACGACGCTTCCTTGGGGGGC-----AATGAT---GGTCACGATCTTCTATCTCGCGAA 22442 || || || || | || |||| |||||| ||| || | || | ||||||| Sbjct 141 AAGCGGCGACTCTTCGGAGGGCTCGAAAATGATCTGGGTGTCGGTGTTTTTCATCGCGAA 200 Query 22443 CCTCGTCGTGCTGCTGTTCTGCATGTGGATTGCCGTCACGAACGTGTTCGTCACCGGTTG 22502 | || |||||||| ||||| ||| | || | | ||| || || || | Sbjct 201 CGTCATCGTGCTGGCCGGATGCATCTGGTTGGCACTGAGCGACGCAATCACGACTGGCTT 260 Query 22503 GTGGGGCACGCTCGGTTTCTCGATAATCGGGCTTTCGTCGGCGGTGAATCTGTTCAAGCC 22562 ||||| ||| || || || ||||| ||| |||| | | ||||| || || || Sbjct 261 TTGGGGAACGACAGGCTTTTCCGCTATCGGCCTTGCGTCAGTCGGCAATCTTTTTAAACC 320 Query 22563 GCTGCGCATGCCGTCCGCGATCGACATGCCCGAGACGCTGATGCTGGTCGGGCTCGCAAT 22622 | | | |||| ||||||||| || |||| |||||| |||||||||| || || Sbjct 321 GGTCTGGATGCGCCAGGCGATCGACGGTCCTGAGATTCTGATGTTGGTCGGGCTGGCGAT 380 Query 22623 CGT-GTGCGTGTGGATCGCTGCGCGCGTCGCCTACTGGCACAAGAAAGGGGGACAACGTG 22681 ||| ||| | ||| | ||||| || |||||| | || |||||| | || Sbjct 381 CGTCGTG-ATTTGGCTGATGGCGCGGAAGGCGTACTGG-ATGAGTAAGGGGAGGGGCATG 438 Query 22682 GCGCGCATTGATATTGCATCGGCCGGTGGGCGCAACCGTGT-TGCGTTCCTCGACACGAT 22740 || |||||||| | | |||| || || | || ||| | ||||||||||||| | | Sbjct 439 GCTCGCATTGACGTGGTCACGGCAGGCGGACAGAA-CGTATGCGCGTTCCTCGACATGCT 497 Query 22741 CGCCGTGAGCGAGAT--CGGCGGGACACTGCTCGCGAAGTCGGACGACGGCTACAACGTG 22798 || | ||| | || || | || |||| | |||||||||||||||||||||| Sbjct 498 GGCGTGGTCCGAATTCACGTCGCG-CATTGCTGG----GTCGGACGACGGCTACAACGTG 552 Query 22799 CTCGTTGGC 22807 |||| ||| Sbjct 553 ATCGTCGGC 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135546600543990