Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq3352 107 2e-18 >seq3352 Length=2265 Score = 107 bits (118), Expect = 2e-18 Identities = 261/388 (67%), Gaps = 12/388 (3%) Strand=Plus/Plus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTCGCAGAGCCGCTGGACGACGGCGCGC 94147 |||||||||| |||||| | |||| || || || || || ||||||| Sbjct 1290 CCCCAGAGCAGGAACACGACGTTGGAAGCTTCCTTGCTGACCCTGGAGATGACGGCGTCT 1349 Query 94148 ACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAGC 94207 || | || |||||||| || ||| ||| || | || || || ||||| ||| Sbjct 1350 GTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGGACGGTAAGC 1409 Query 94208 GTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGGC 94267 ||||| ||||||||||| || | || |||| || ||||||||||| ||| Sbjct 1410 ACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAGCCGTGGGTGGG- 1468 Query 94268 GCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGGGG 94326 ||| ||| | | |||||| | | || || ||||||||| ||||| || || Sbjct 1469 GCGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGG 1525 Query 94327 GATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTA 94386 ||| || ||| | || || ||| ||| ||||| ||||| |||||||||||| Sbjct 1526 CGGCGGGACTCCGTGGCGCACCGAGAAACTCAGTCCGTGAGCCTGCTGCGGCCCGTGGTA 1585 Query 94387 CGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTCCA 94443 |||||||||||| | || |||||||||| ||| | ||||| || || ||| | Sbjct 1586 CGGGTCCTGGCCCAGAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC-- 1643 Query 94444 GGCGAACACGTCCTCGCGC-GCGGGCAG 94470 |||||||||||| || || ||||| || Sbjct 1644 -GCGAACACGTCCGCGGGCGGCGGGTAG 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458734162446600