Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_006151.1
Length=143461
Score E
Sequences producing significant alignments: (Bits) Value
seq3352 107 2e-18
>seq3352
Length=2265
Score = 107 bits (118), Expect = 2e-18
Identities = 261/388 (67%), Gaps = 12/388 (3%)
Strand=Plus/Plus
Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTCGCAGAGCCGCTGGACGACGGCGCGC 94147
|||||||||| |||||| | |||| || || || || || |||||||
Sbjct 1290 CCCCAGAGCAGGAACACGACGTTGGAAGCTTCCTTGCTGACCCTGGAGATGACGGCGTCT 1349
Query 94148 ACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAGC 94207
|| | || |||||||| || ||| ||| || | || || || ||||| |||
Sbjct 1350 GTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGGACGGTAAGC 1409
Query 94208 GTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGGC 94267
||||| ||||||||||| || | || |||| || ||||||||||| |||
Sbjct 1410 ACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAGCCGTGGGTGGG- 1468
Query 94268 GCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGGGG 94326
||| ||| | | |||||| | | || || ||||||||| ||||| || ||
Sbjct 1469 GCGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGG 1525
Query 94327 GATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTA 94386
||| || ||| | || || ||| ||| ||||| ||||| ||||||||||||
Sbjct 1526 CGGCGGGACTCCGTGGCGCACCGAGAAACTCAGTCCGTGAGCCTGCTGCGGCCCGTGGTA 1585
Query 94387 CGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTCCA 94443
|||||||||||| | || |||||||||| ||| | ||||| || || ||| |
Sbjct 1586 CGGGTCCTGGCCCAGAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC-- 1643
Query 94444 GGCGAACACGTCCTCGCGC-GCGGGCAG 94470
|||||||||||| || || ||||| ||
Sbjct 1644 -GCGAACACGTCCGCGGGCGGCGGGTAG 1670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 458734162446600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |