Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq7138 181 4e-41 >seq7138 Length=12284 Score = 181 bits (200), Expect = 4e-41 Identities = 517/774 (67%), Gaps = 33/774 (4%) Strand=Plus/Plus Query 7833 AGCCAGAGGCATTCGATGCGGTCACGTGCGCCGTCGGCGAGGGCGTTCCGCTCGAGGCGG 7892 |||||||| |||| | || ||| |||||||| ||| | || || |||| ||| Sbjct 10444 AGCCAGAGCGATTCCACCCGAGGACGCGCGCCGTCAGCGTGTGCACGCCCATCGATGCGT 10503 Query 7893 TGCCAGTGGCGGTAAAGGCGGTCGTAGAGCGGGCAGGGGTACCCAGAGAGGACCACCATG 7952 | ||||| | | ||| |||||| ||| ||| ||||||| |||||| ||||| Sbjct 10504 TTCCAGTCCCCAAATAGGTCGTCGTATAGCTTGCATCGGTACCCGCTGAGGACGACCATT 10563 Query 7953 CCGGTCAACCCCTTGAGGA-ACGCC--GCCAGGTCCCGGTGCTGGTTGTCGTCCAGTTCG 8009 || || | | | | ||| |||| || || || || ||||||| ||| | || |||| Sbjct 10564 CCC-TCTAGC--TGGCGGAGACGCTCGGCGAGTTCTCGATGCTGGTCGTCATTCATTTCG 10620 Query 8010 TGTCGGTACGACTTGCCGGTAGCGTT-GTGGCGCACCTTGGTGCTGCGAGTGGAATGGAC 8068 || ||||| ||||||| || | ||||| | |||| || ||| ||||| Sbjct 10621 TGGCGGTA-----TGCCGGT-GCATGCGTGGCA-AGCTTG------CGTGTGCTGTGGAC 10667 Query 8069 GTAGGGCGGATCGACGTAGTGCAGCGTGCTC-GGCCGGTCGTGATGCTCCATCAGCACCA 8127 || |||||||| ||||| ||||| || ||| || | ||||| || |||| ||| Sbjct 10668 ATATGGCGGATCCACGTAATGCAGTGT-CTCTGGTCCATCGTGCTGACCCAT--GCAAGC 10724 Query 8128 GA--GCGTCGCGGTTCTCGATCACCACGCCCTGTAGGCGCTCGGTGATAGAGGCCAACGC 8185 || || ||||| ||||||| || |||||| | ||||| ||| | | || Sbjct 10725 GATGGCTTCGCGATTCTCGACGACGACGCCCCGCAGGCGACTTATGACGGCGCGCAGGCA 10784 Query 8186 ATCGGGGTAGTTGCGCCAGTCCAGCGCGGGCGCGGTACCACTCCTCGCCGAC-GTT-GAG 8243 ||| |||||||| |||||| | || |||| || || | | || ||| | | Sbjct 10785 ATCCGGGTAGTTCATCCAGTCATGGGCAGGCGTCGTTCCGGAGC--GGTTACTGTTCGCG 10842 Query 8244 CGGAACCCCGTGCGTTCGCCGCTCGCCGCGGCGCTGCCGAATCCCTGGAAGCTGCGGACA 8303 ||||| ||||| || |||| || |||| ||||||||| |||||| |||| Sbjct 10843 CGGAATCCCGTTGCTTGGCCGGA-GCTCCGGCAGAACCGAATCCCATGAAGCTTCGGATG 10901 Query 8304 ACCATCCGCCGGGCGCGCTCGAGCGGATCCGTCGTTTCCGCGTAGCTGGCTTCGAACTCT 8363 | | | ||||| || |||| | ||| || || |||||| | | |||| || Sbjct 10902 AGCGTTCGCCGCGCCTGCTCTATCGGGTCTTCGGTAGGTGCGTAGGCGCTTACGAATTCC 10961 Query 8364 TCACGGGCAAACGGGGTAAGCGC-CAGGGCCTGGCGCAGTTCCTCGCCACGGTCCCGCGC 8422 | || || || || || | | | || | | ||| || | |||||| | || || Sbjct 10962 TTGCGTGCGAAGGGTGTCAACTCGCAAGCGATCGCG-AGCTGCTCGCCTTGATCGCGACA 11020 Query 8423 GACGCGGAACAGGTTCACCACGTCCCCGTCGAGGTCGTTGTAGACCTCGGCGTAGCTGCG 8482 ||||| ||||| ||| ||| || ||||||||||||||||||||||| ||||| ||| Sbjct 11021 TACGCGAAACAGATTCGTCACTTCACCGTCGAGGTCGTTGTAGACCTCAGCGTATGAGCG 11080 Query 8483 GGCCTTCCGCAGCAGGACAGAAGCCGCGCCGCCGAAAGGCTCGATGTAGGTGTGGTGGGG 8542 | ||| ||||| || || || | |||||||| |||| |||| | | ||| Sbjct 11081 AGGCTTGCGCAGTAGCACGCTCGCGCCTCCGCCGAAGCATTCGACGTAGATCCGATGGCT 11140 Query 8543 CGCGAGGTGCTGGATGATCCACGGGGCGAGCAGCCACTTGCCGCCGTGGTAGCG 8596 | | ||||||||||||||||| ||||| |||| |||||||||||||| || Sbjct 11141 GGGCAAATGCTGGATGATCCACGGTGCGAGACGCCATTTGCCGCCGTGGTATCG 11194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208404836845660