Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq844 136 6e-28 seq777 127 3e-25 >seq844 Length=1852 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 500 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 442 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| || ||||| |||| || | |||| || |||| Sbjct 441 TCCGTCGTCTCGCACGCCGTGGTGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 382 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 381 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACTG 322 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || || || ||||||| |||| || || | || || || | Sbjct 321 AGCACGCTCGCCGCAAAACCGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 262 Query 16671 GCCG 16674 |||| Sbjct 261 GCCG 258 >seq777 Length=1413 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 64 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 122 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| |||| || | |||| || |||| Sbjct 123 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 182 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | | ||| |||| || | || || || | Sbjct 183 CGCGCGGCGTGCTCAAGGTCTTCCTGGAAAACGTCATCCGCGACTCCGTCACGTACACGG 242 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || ||||| | Sbjct 243 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGG 302 Query 16671 GCCG 16674 | || Sbjct 303 GACG 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041247209555