Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq22877 201 3e-46 >seq22877 Length=809 Score = 201 bits (222), Expect = 3e-46 Identities = 388/570 (68%), Gaps = 8/570 (1%) Strand=Plus/Minus Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || || || |||||||| || |||||||| |||| | || |||||| | ||||| Sbjct 786 CGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAA 727 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 || | || ||| ||||||||||| |||| || || || | || ||| Sbjct 726 GCCAATGGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTGG 667 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || ||||| | | || || || |||||||| || |||||||| || || ||||| Sbjct 666 GGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACG 607 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || ||| ||| |||| ||||| ||||| |||| | ||||| ||||| ||| ||| Sbjct 606 ATCAACGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCC 547 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | |||||||||||| || || |||||||||||| ||||||||| |||| || || || Sbjct 546 TTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATC 487 Query 364225 CAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTA 364284 | |||||| |||| ||| | || || ||||| | || |||||| || || Sbjct 486 CGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACACGTCGCCGGACGAGGTGGCTGTG 427 Query 364285 TGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACCACCAG 364344 || ||| | ||||| | ||||| || ||| || | || || ||| || ||||| Sbjct 426 TGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGAGGAAGGAGTTTTCAACTACCAG 367 Query 364345 CATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAAT 364404 | | ||||| || || | | || |||| | ||||||| |||||| || Sbjct 366 AAGTTGTATGAAGTGACGAAGGTGGTCACCCGCAACTTAAACAAGGTCATCGACGTCAAC 307 Query 364405 TATTATCCAATTCCTGA---AGCCGAGC-GTTCTAATATGCGTCATCGCCCGATTGGTCT 364460 || || || | ||| || || || || || |||||||| ||||| || ||| | Sbjct 306 TACTACCC----CGTGATCGAGGCGCGCAAGTCCAACATGCGTCACCGCCCCATCGGTAT 251 Query 364461 TGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 ||| || ||||||||||| |||| ||||| Sbjct 250 TGGCGTCCAGGGCCTCGCGGACGCGTTTAT 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302733474539570