Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq10511 140 1e-28 >seq10511 Length=4473 Score = 140 bits (154), Expect = 1e-28 Identities = 276/401 (69%), Gaps = 8/401 (2%) Strand=Plus/Minus Query 35482 GCCGTTGCCGGCCTATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGA 35541 || |||||| ||||||||||| | ||| || ||| | || ||||||| || || Sbjct 991 GCAGTTGCCCGCCTATGCCACGCCGGGCAGCGCCGGCCTCGATTTGCGTGCGTGCCTCGA 932 Query 35542 GGCGCCGATGACGTT-GCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCC 35600 || || ||||| | || || |||| | | | ||| | || | || | || ||| Sbjct 931 CGCACCCATGACCATCGCCGC-GGGCCAGACCGTGCTCGTGCCGACGGGTCTGGCCGTCC 873 Query 35601 ATCTGGCCGACCCGCAGCTGTGC-GCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGT 35659 |||||||||| ||| ||| || ||| |||| || |||||||| || || |||||| Sbjct 872 ATCTGGCCGATCCGG-GCTACGCCGCGCTGATTCTCCCGCGCTCCGGTCTCGGCCATAAG 814 Query 35660 CACGGCATCGTACTCGGCAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGT 35717 ||||||||||| || ||||| ||| |||||| ||||| |||| || |||||| || Sbjct 813 CACGGCATCGTGCTGGGCAATCTGGT--CGGCCTGATCGACTCGGACTATCAGGGGCAGT 756 Query 35718 TGTTGATCAGCACCTGGAATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGA 35777 || || || || |||||||||||| ||| | ||| | | ||| ||| || Sbjct 755 TGATGGTCTCGACATGGAATCGCGGCAACGAACCGTTCGTGCTGAACCCGTTCGAGCGTC 696 Query 35778 TTGCGCAGCTGGTGATCCTGCCGGTCGTGCGCGTAGGCTTGCGAGTGGTGGACACTTTCG 35837 | || || ||||||||| |||||||||||| | | || | || ||| ||| Sbjct 695 TGGCACAACTGGTGATCGTGCCGGTCGTGCAAGCCGAGTTCAACATCGTCGACGAATTCC 636 Query 35838 TCGACAGCGCGCGCGGCGCGGGTGGATTCGGTCACACCGGC 35878 || |||| |||||||| ||||| |||||| |||||| Sbjct 635 CGGAAAGCGATCGCGGCGCCGGTGGCTTCGGTAGTACCGGC 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149070234286350