Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2070 140 3e-28 seq2604 120 3e-22 seq9309 87.8 2e-12 seq22877 86.0 6e-12 >seq2070 Length=5564 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||||||||||| || |||||||| |||||| Sbjct 1064 CCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1123 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 1124 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1183 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || |||||||| | | || | | || | | ||| | | Sbjct 1184 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 1243 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||||||||| Sbjct 1244 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 1290 >seq2604 Length=2437 Score = 120 bits (132), Expect = 3e-22 Identities = 349/526 (66%), Gaps = 31/526 (6%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || ||||| ||| |||||| | |||||||| | |||||| | || ||||| Sbjct 2124 ATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGAC-------CCGCG 2072 Query 46144 ACTTTCGCCG-------AGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttC 46196 | | ||| || ||||| || |||| || || |||||||||| |||| || || Sbjct 2071 AGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTC 2012 Query 46197 TGGCA-GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGT 46255 ||| ||| ||| ||||||| | |||| | ||| ||||||| ||||||| | Sbjct 2011 GGGCTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCT 1953 Query 46256 TTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACT 46315 | ||||||||||| || ||||||||| |||| |||||||| ||||| ||| | Sbjct 1952 TCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGT 1893 Query 46316 ATAACACTCGCGTGCACGACAAGCTTGCGCCCGA---CACCGTGC-TGAGCATGTTCAAG 46371 | || | ||| ||||||| ||| || | ||||| ||| || | Sbjct 1892 ACTCCAAGCTGGTG---AACAAGCT---GCCGGAGAGCCGCGTGCACGAG-ATCGTGCGC 1840 Query 46372 GAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGC 46431 || |||||| | || ||| | ||||| | | | | || || | | ||| | ||| Sbjct 1839 GACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGC 1780 Query 46432 ATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGC-A 46490 |||||| | | |||||| | ||||||||||| || || ||||| ||||| || | Sbjct 1779 ATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTACTC 1721 Query 46491 GCTTCACCAGCCGAAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGAACAACATCT 46549 ||| | ||||| || | | ||| || || || || | ||| ||| |||| Sbjct 1720 GCTGGGTGTGTCGAAG-ATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCT 1662 Query 46550 CCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | ||| ||||||| || || |||||||| |||||||| |||||||| Sbjct 1661 CGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1616 >seq9309 Length=2487 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | || |||||| || |||||||| || Sbjct 1179 CCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 1120 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 1119 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 1060 Query 131128 ATTCCT 131133 |||||| Sbjct 1059 ATTCCT 1054 >seq22877 Length=809 Score = 86.0 bits (94), Expect = 6e-12 Identities = 509/801 (64%), Gaps = 33/801 (4%) Strand=Plus/Plus Query 145216 CTTTAGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTG 145272 ||| |||||| |||| | ||| | ||| | ||| | ||| ||||||||||| |||| Sbjct 1 CTTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACATGTCGAACTG 60 Query 145273 CAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTG 145330 || ||||||| ||| ||||| ||| || || | ||| | || |||| ||| Sbjct 61 GAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTA--CGGGCCGAGTTCCTTG 118 Query 145331 GCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTT 145389 |||| ||| || | || ||||| ||| |||| || || |||||| || | | |||| Sbjct 119 GCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTT 177 Query 145390 GAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAG 145449 |||| | || | ||||||||| ||| | || || | ||| || || ||||| Sbjct 178 GAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCGCGAG 237 Query 145450 CCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGAT 145509 ||||| | || | |||||||| || || ||||||| | | | ||| |||||| Sbjct 238 GCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC---CTCGAT 294 Query 145510 ---AGGATA-TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA 145565 || || | | | || |||||| | || || ||||| || || ||||| || | Sbjct 295 CACGGGGTAGTAGTTGAC-GTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCA 353 Query 145566 TGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACC--ACACAGCTATTGAC 145623 | |||||| | ||| || | || || |||| | | |||| Sbjct 354 CTTCATACAACTTCTGGTAGTTGAAAACTCCTTCCTCCACGAACTTAGGCAGC------- 406 Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCT 145682 || | |||||||| || || || ||| ||| | ||||| || |||| | | | || Sbjct 407 -GCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACG-TGTACTCCATCACCT 464 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGC 145742 | ||| || ||||| | ||| || || || || ||||| || || | |||| Sbjct 465 CACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 524 Query 145743 ACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAAC 145802 |||||||||||| | ||| | || | || ||||| | ||| | |||| ||| | Sbjct 525 CCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCA--ATATGGC 582 Query 145803 GGTGCA-AG-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCT 145860 | || || | ||| || | | || || ||| ||||| ||||| || Sbjct 583 GAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTC 642 Query 145861 GTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACA 145920 ||||| |||| || || || |||| || | || || || || ||| || || Sbjct 643 ATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCA 702 Query 145921 CATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAG 145980 | || ||| ||| ||||| | || | || ||| |||| ||| |||||||| || Sbjct 703 AAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAG 762 Query 145981 CGCGTACATCAAGTCGCGCGC 146001 ||||| | || |||||| || Sbjct 763 GGCGTAGAACAGGTCGCGAGC 783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471793697558400