Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq2654 95.1 1e-14 >seq2654 Length=2984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || ||||| |||| ||| || || || || || ||||| | |||||||| ||| Sbjct 1353 ATCTTCATCGGACCCACGTTCTACCAGCGCCTGAAGCATATGGTCGACGACAAGATCCAC 1294 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||| | ||| |||||||||| ||||| | | Sbjct 1293 TCGCGCTCGCGTGGTCCCGTGACCATGCTGACGCGCCAGCCCATGGAGGGTCGTGCTCGC 1234 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | |||||||| || | ||||||||||| || || |||||| ||||||| | Sbjct 1233 GAAGGTGGCCTGCGTATGGGAGAGATGGAGCGCGATTG---TCTGGTCTCGCACGGCTCG 1177 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || | |||||||| Sbjct 1176 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGTGTCCACGTGTGC 1117 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 1116 GATGTCTGCGGCATCAT 1100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611108199476000