Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2604 147 4e-30 seq4089 123 5e-23 seq19099 105 1e-17 seq4829 100 6e-16 seq20941 87.8 4e-12 seq5831 86.0 1e-11 seq30951 84.2 4e-11 >seq2604 Length=2437 Score = 147 bits (162), Expect = 4e-30 Identities = 531/814 (65%), Gaps = 20/814 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| ||| ||||| | ||||| ||||||| ||||| | Sbjct 1634 TCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTT 1693 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TAC-GAAGATGCGGTCTGCCACAAACTCCA 251680 | ||||| ||| | || || | ||| | ||| ||||| ||||| ||||| | Sbjct 1694 ACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGA--CGGTCGGCCACGAACTCGA 1751 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||||| |||| | ||| ||| | |||| Sbjct 1752 TGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCACAGGGAGC-GAGTCACGC 1810 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || | ||| | | || || || ||| || | | ||| | | | | Sbjct 1811 ACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTGCACGCGGCTCTCCGGC 1870 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGT 251857 ||||||||| ||||||| ||||||| ||| | ||| || | || ||||| ||||||| Sbjct 1871 AGCTTGTTCACCAGCTTGGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCTCGT 1928 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| | |||||| || | | |||||||||||| | || || ||| |||||| Sbjct 1929 CACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCC 1988 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| || || || ||||| | | ||||| ||| | | || | | Sbjct 1989 AGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCA 2048 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTTC 252033 | ||||| | ||||| | ||| | |||| | ||||| ||| || ||| Sbjct 2049 GACGCTCCGGGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTTC 2107 Query 252034 TT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 || | || | | ||||| || ||||| ||| | || || | ||| | | || Sbjct 2108 TTCTTCACACAC-GGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATC 2166 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || |||| || || || |||| ||| || |||||| ||| || || Sbjct 2167 CTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGATGGCGAT 2226 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| || | ||||| || || || | ||||| || ||||| | || Sbjct 2227 CTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAAGTTCATGGC 2286 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| |||| ||||| |||||| | || |||||| | || | | ||||||||| Sbjct 2287 CAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 2346 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 | ||||| | ||| | || || | |||||| | ||| || ||| | Sbjct 2347 GAACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTCAGGTCGTGCACCAGGTCCAG 2403 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTC 252366 || || |||||||||| | || | |||||||| Sbjct 2404 CTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTTC 2437 >seq4089 Length=911 Score = 123 bits (136), Expect = 5e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || || | ||| |||| ||||| ||||| |||||||| || || ||||| | ||||| Sbjct 52 CGTATCGCTGTGCTTGGTCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACG 111 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTA 280282 || ||| || | || ||| |||| | | |||||||| || |||||| | || || Sbjct 112 GGTGAGGTGGAGCCGAC-GAGCGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTA 170 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 ||| ||||||||||||||||||||||| ||| ||||| ||| ||| | ||||| || Sbjct 171 CGTGGCTCAGCACGCTTTCCACCACATTGAGTCGCACCTCGACGAGACGGCCAACCAGTA 230 Query 280343 CATTCAGTGGCG 280354 ||| |||||||| Sbjct 231 CATCCAGTGGCG 242 >seq19099 Length=950 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || || |||||||||| || || || | ||||||||||| |||||| Sbjct 105 AAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGAGCAG 164 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| ||||||| || || |||||| ||||||| ||| || || |||||||| || Sbjct 165 AGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATCCAC 224 Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGAT 218826 | ||| || |||| ||||||||| ||| | ||| | |||| || |||||| Sbjct 225 CTCCTG-TCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGAT 275 >seq4829 Length=19763 Score = 100 bits (110), Expect = 6e-16 Identities = 246/368 (67%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 270608 CAGTTGCTTGGTATCCTTGGGGAAACAGTAACCACCATACCCAAAGCTTGGGTTACAGTA 270667 |||||||||||| || || |||| ||||| || || || || ||||| ||||| ||| Sbjct 2024 CAGTTGCTTGGTGTCTTTCGGGAGGCAGTAGCCCCCGTAACCGAAGCTCGGGTTGTTGTA 1965 Query 270668 CCCGCTGCCAATACGAGGTTCCAGCATAACCCCCTCCACAATCTTGGAGGCA-TCAAGGT 270726 | |||| || || || || || ||| || || ||||| ||| | | || ||| Sbjct 1964 GTGGGTGCCGATGCGCGGATCTAGGCCAACGCCGTCGACAAT-TTGACGCGAGTCGAGGC 1906 Query 270727 TGTGTTTGAGAGCAAATGTGTCCAGTTCATTGAAATAACTAACGCGCATTGCCAGGTATG 270786 |||| || | | || || || ||||| || |||||||| || ||||| | Sbjct 1905 CGTGTGCAGCTGCGTAGCTATCGAGCTCGTTGAAGTACGCGACGCGCATCGCGAGGTAAG 1846 Query 270787 TGTTGGCAAATAGTTTTA-CGCTTTCGGCCTCCCGAGACCCCATGTAGATCTTGGGAACA 270845 |||| || || || || | ||||| | || ||| | || | | | | | |||| Sbjct 1845 TGTTCGCGAACAGCTTGATCGCTT-CTGCTTCCGTACTGCCGGTAAACAGCGTCGGAATG 1787 Query 270846 TCCGGGATGCGAGAAGCAGAAGCGAGCATTTCCGCAAACTCGATGGCTCGTGGGGCATTG 270905 ||| | || | | | ||| | | |||||| | ||| || | || | Sbjct 1786 TCCTGCTTGATCGCACCGCGCTTGAGGAGATTCGCAAAGGCTTCGGCACGCGCGGACTGT 1727 Query 270906 TCGCCCACGATGATACGCGAAGGATATAGGTTGTCGTAGAGAGCACGGCCTTCGCGGAGA 270965 |||||||||| ||| ||||| |||| ||||||||||| || || ||||||||||||||| Sbjct 1726 TCGCCCACGACGATCCGCGAGGGATGGAGGTTGTCGTAAAGGGCGCGGCCTTCGCGGAGA 1667 Query 270966 AACTCGGG 270973 |||||||| Sbjct 1666 AACTCGGG 1659 >seq20941 Length=875 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || |||||||||||||| || ||||||| || || ||||| | Sbjct 550 ATCCGCGGTCTCTCGGGCGGCCAGAAGGTCAAGCTCGTCATCGCTGCTGCCATGTGGAAC 491 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| ||||||||| | |||||| Sbjct 490 CGTCCGCACTTGTTGGTGCTGGATGAGCCGACGAACTACTTGGACCGCGCGGCGCTGGGC 431 Query 280833 GCTCTG 280838 || ||| Sbjct 430 GCGCTG 425 >seq5831 Length=16093 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769 || || ||||| || || || || || ||| ||||| |||||||| ||||||||| Sbjct 114 GCGCTGTTCCTGGGGCGTGGTCTGCACTACCCGATTGCCCTGGAAGGCGCACTCAAGCTC 173 Query 19770 AAGGAGATCAGTTACATCCACGCAGAGG-GTATTTCGGCAGGCGAACTTAAGCACGGGCC 19828 ||||| ||| ||||||||||| |||| ||| | |||| |||||||| ||||| || || Sbjct 174 AAGGAAATCTCGTACATCCACGCCGAGGCGTA-TCCGGCTGGCGAACTGAAGCATGGCCC 232 Query 19829 TCTTGCTCT 19837 || || || Sbjct 233 GCTGGCGCT 241 >seq30951 Length=610 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 247 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 188 Query 142565 CCAC 142568 |||| Sbjct 187 CCAC 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027347763280535