Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2070 159 6e-34 seq18074 138 2e-27 seq4089 131 3e-25 seq20941 102 2e-16 seq8816 86.0 1e-11 >seq2070 Length=5564 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| ||||| || || || |||| |||| ||| ||||| ||||| || |||||||| | Sbjct 1056 TTTAGTTTCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 1115 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||| || || | || || || | |||||| |||||||| ||||| | || |||| Sbjct 1116 AGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGT 1175 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 |||| || ||||| |||||||| |||||||| ||| ||| ||||| | ||| | | Sbjct 1176 CGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACG 1235 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || | |||||||| || ||||| || ||||||||||| ||||||||| Sbjct 1236 GCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 1291 >seq18074 Length=1002 Score = 138 bits (152), Expect = 2e-27 Identities = 317/470 (67%), Gaps = 12/470 (3%) Strand=Plus/Plus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 ||||| |||| ||||| || || || | | || |||||| |||||| || Sbjct 532 CCAGTAGCAACAACAAAATCATCCGGAGTATCATGTTGAAGCATTCGCCACATGCACTCC 591 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || ||||| || || |||||||| || || || ||||| | |||||| | || ||||| Sbjct 592 ACGTAGTCGCGAGCGTGGCCCCAGTCTCGTTTCGCGTCGAGGTTCCCCACAAAGAGGCAC 651 Query 268331 TTCTGCTTGCCGAGCTTCACG----CGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAA 268386 |||| | || ||| ||| || ||| | | || ||||| || || || ||||| Sbjct 652 TTCTCAATACC-AGC---ACGAATACGCACAACAGCTCGGGTGATCTTGCGAGTGACGAA 707 Query 268387 CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGC 268445 || ||||||| | || || ||||||||||| | || ||||| ||| || ||||||| Sbjct 708 GGTTGGGCCACGTCGGGGACTTTCGTGGTTGAATAAAATCCCGTT-CACGGCAAACATGC 766 Query 268446 CATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACG 268505 | || || || || | ||||||||| ||||| | || ||| ||| || || |||| | Sbjct 767 CGTAGGCTTCGCGATGGTTCACGACACTCCAGAAGGCGAACTGCTTCGCGACACCGTAGG 826 Query 268506 GAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAG 268564 | || || || ||||| || ||| | || | || || | | || || ||||| | Sbjct 827 GCGATCGCGGGTGGAACGGAGTC-TCCTCGTCCTGCGGTGTGGCGCGCACCTTGCCGTAC 885 Query 268565 AGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATT 268624 | || ||||| |||||||||||| |||| | ||| || || ||| | || | Sbjct 886 AATTCACTCGTCGAAGCTTGGTAGAACCGCGTTGAGTGTTCTAGCCCACAGGTGCGCAAG 945 Query 268625 GCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTC 268674 | ||||| || || | |||| || || || ||||| || ||||| Sbjct 946 CACGTGAGCAGGCGGAGCGCACCCACCCCGTCGACATCCGCCGTGTACTC 995 >seq4089 Length=911 Score = 131 bits (144), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| Sbjct 242 CGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGGTGCGACTCAATGTGGTGGAAAGCG 183 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || ||||||||||| || | ||||| Sbjct 182 TGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGCTTCCACACCTGACCGCTCGTCGGC 123 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| || || || | |||||| ||||| | ||| || ||||| ||||| |||| | Sbjct 122 TCCACCTCACCCGTCAGCATCTTGATCAGCGTCGACTTACCGGCACCGTTGGGACCAAGC 63 Query 225161 AC 225162 || Sbjct 62 AC 61 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| ||| | || ||||| ||| ||| || | ||| || | ||| || ||||| Sbjct 786 GTGAGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGGGCACCAAG 727 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||||||| |||||||||||||||| || | | | ||| ||| | |||| Sbjct 726 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCAAGCACAAGGATGTGCGGGTTCAGCCA 667 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || || ||| | | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 666 CATAGCGGCAGCGAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 607 Query 224629 GTGAGTCGTGAATTCGG 224645 ||| || ||| |||| Sbjct 606 GTGGGTACCGAACTCGG 590 >seq20941 Length=875 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 |||||||| |||| | ||||||| | | ||||||||||||||||||| | | | ||| Sbjct 426 AGCGCGCCCAGCGCCGCGCGGTCCAAGTAGTTCGTCGGCTCATCCAGCACCAACAAGTGC 485 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 || | | ||||| ||| ||| | | || ||||| |||||||| ||||| ||||| ||| Sbjct 486 GGACGGTTCCACATGGCAGCAGCGATGACGAGCTTGACCTTCTGGCCGCCCGAGAGACCG 545 Query 224618 CGGATC 224623 |||||| Sbjct 546 CGGATC 551 >seq8816 Length=1240 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 178021 TCTCCACATCAAACTTCTTCGAAAAGATGTTGGTGAGCTTTGAACCGTATCCATTCCTGC 178080 |||| || | |||| ||||| |||||||||| ||||| | ||||| || || | || Sbjct 225 TCTCGACCACGAACTCGTTCGAGAAGATGTTGGCCAGCTTGGCGCCGTAGCCGTTGCGGC 166 Query 178081 CTGCGCCAGTCCTCTCCTGGGCATCATCAAAGTTCTCGCCCGTGAGGAGGTGGCCGAAGA 178140 | | ||| ||| || || || ||||| ||||||||| ||||||||||||| Sbjct 165 CGCCCGTGGTCTTCTTCTTCTTGTCGTCGAAGTTGCTGCCCGTGAGCAGGTGGCCGAAGA 106 Query 178141 TGAGCTCGGGCACATAG 178157 ||||||||||||| ||| Sbjct 105 TGAGCTCGGGCACGTAG 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921194594402200