Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2604 396 5e-105
seq22877 226 5e-54
>seq2604
Length=2437
Score = 396 bits (438), Expect = 5e-105
Identities = 595/837 (71%), Gaps = 25/837 (3%)
Strand=Plus/Minus
Query 42317 GAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGG 42376
||||||| || ||| |||||| ||||||||| | ||||||| | ||| | |
Sbjct 2437 GAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGA 2378
Query 42377 CTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGC 42436
||||| | ||| | || ||||| ||| ||| |||| || | ||||||||||||||
Sbjct 2377 CTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGC 2318
Query 42437 CGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTA 42496
||| |||||||| || || ||||||||||||| | |||| || || ||||||
Sbjct 2317 TGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGT 2258
Query 42497 CTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGT 42556
||||| |||||||||||||| |||||||| ||||| |||||| | ||||| |||||
Sbjct 2257 GCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGT 2198
Query 42557 GTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTT 42613
||| | ||||||| ||||||||||| |||| | ||| || ||| |
Sbjct 2197 GTATTCG---CTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCT 2141
Query 42614 CAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT 42673
||||| || ||||| || || | |||||||| ||| ||||||||||||| |||
Sbjct 2140 GCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTG 2081
Query 42674 CGA-----GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728
||| |||| || || | | || ||| | ||| | || || | || || |||
Sbjct 2080 CGACCCGCGAGTGTCGTCGTACC---CG--GAGCGTCTGCTGGCGTTCGCAGCTGTGGAG 2026
Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGAT 42787
|||||||||||||||||| | ||| ||||||||||||||||||| || || || ||
Sbjct 2025 GGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTC-AT 1967
Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847
||| || || | |||||||||||| || |||||| | |||||||| |||| | ||||||
Sbjct 1966 GCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTT 1907
Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907
|| |||||| ||| ||| | | || | |||||| || || || || | |
Sbjct 1906 CGCGTGCCTCATGTACTC---CAAGCTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGA 1850
Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967
||| | || || ||| ||||||| | |||||| | | ||||| || |||
Sbjct 1849 GATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGA 1790
Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027
||| ||||||||||| | ||||||||| |||||||| ||| ||| ||||||| |||
Sbjct 1789 GCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCT 1730
Query 43028 CCTGTGCCAGATGGGTCTCAGCCG--CCTCTACAACACGCCGTGCCCCTTCGACTTTATG 43085
|||| | | ||||| | | || |||||||| | ||| ||||||| |||
Sbjct 1729 GCTGTACTCGCTGGGTGT--GTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATG 1672
Query 43086 GAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142
|| | |||||| || ||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1671 GACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTAC 1615
>seq22877
Length=809
Score = 226 bits (250), Expect = 5e-54
Identities = 511/764 (67%), Gaps = 32/764 (4%)
Strand=Plus/Plus
Query 244293 TGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCG 244352
||| |||||||||||| ||||| | | |||||||| |||| ||||| | | |||
Sbjct 39 TGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCT 98
Query 244353 GGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATG 244411
||| || ||| || ||| | || || | | || | ||||||| ||||||||
Sbjct 99 CGTACGGGCCGAGTTCCTTGGCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATG 157
Query 244412 GTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATC 244471
||||||||||| ||||||| | || |||||||| ||| ||| | | | |||
Sbjct 158 GTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATG 217
Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531
| || || |||| || || ||||| ||||| || |||||||| | ||| ||| |||||
Sbjct 218 AGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTG 277
Query 244532 GA---GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588
|| |||| || ||| ||||||||| ||||| ||||||| |||||||| | ||||
Sbjct 278 GACTTGCGC---GCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTG 334
Query 244589 CGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCT 244646
||||||| || | || || || || | ||| ||| | | | ||||
Sbjct 335 CGGGTGACCACCTTCG--TCACTTCATACAACTTCTGGTAGTTGAAAAC-------TCCT 385
Query 244647 CGGCGATGGTGATCCT-CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCC 244705
|||| ||| |||| || || || |||| |||||| || |||
Sbjct 386 ------------TCCTCCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCC 433
Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765
||||| |||| ||||||| | | ||| ||| | ||| ||| | ||| |||
Sbjct 434 ACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTG 493
Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825
|| |||| ||| || || |||||| |||| ||||||||||| | ||| |||||| |
Sbjct 494 CCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACT 553
Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885
|| ||||||| ||||||| | | | | | ||| || | | || |||| |||| ||
Sbjct 554 CCCGTCTCGATCTGGGCGTCCAATATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTG 613
Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945
|| || ||||| | |||||| || ||||||||||| ||| ||||||| |
Sbjct 614 CGGGCGCGTCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCAC 673
Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005
|| | || || ||| | ||||| | ||||||||||| ||| | | | |||
Sbjct 674 TCATAGAGTCCAGGGGCCTCGTTAGGGCAAAAGAGACTCCACTTGCCATTGGCTTCCACC 733
Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049
|||| |||||| || || || | ||| ||||| | ||| |||||
Sbjct 734 CTCTTCATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTC 777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943900849547600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |