Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2604 396 5e-105 seq22877 226 5e-54 >seq2604 Length=2437 Score = 396 bits (438), Expect = 5e-105 Identities = 595/837 (71%), Gaps = 25/837 (3%) Strand=Plus/Minus Query 42317 GAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGG 42376 ||||||| || ||| |||||| ||||||||| | ||||||| | ||| | | Sbjct 2437 GAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGA 2378 Query 42377 CTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGC 42436 ||||| | ||| | || ||||| ||| ||| |||| || | |||||||||||||| Sbjct 2377 CTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGC 2318 Query 42437 CGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTA 42496 ||| |||||||| || || ||||||||||||| | |||| || || |||||| Sbjct 2317 TGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGT 2258 Query 42497 CTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGT 42556 ||||| |||||||||||||| |||||||| ||||| |||||| | ||||| ||||| Sbjct 2257 GCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGT 2198 Query 42557 GTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTT 42613 ||| | ||||||| ||||||||||| |||| | ||| || ||| | Sbjct 2197 GTATTCG---CTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCT 2141 Query 42614 CAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT 42673 ||||| || ||||| || || | |||||||| ||| ||||||||||||| ||| Sbjct 2140 GCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTG 2081 Query 42674 CGA-----GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||| |||| || || | | || ||| | ||| | || || | || || ||| Sbjct 2080 CGACCCGCGAGTGTCGTCGTACC---CG--GAGCGTCTGCTGGCGTTCGCAGCTGTGGAG 2026 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGAT 42787 |||||||||||||||||| | ||| ||||||||||||||||||| || || || || Sbjct 2025 GGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTC-AT 1967 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || || | |||||||||||| || |||||| | |||||||| |||| | |||||| Sbjct 1966 GCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTT 1907 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 || |||||| ||| ||| | | || | |||||| || || || || | | Sbjct 1906 CGCGTGCCTCATGTACTC---CAAGCTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGA 1850 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 ||| | || || ||| ||||||| | |||||| | | ||||| || ||| Sbjct 1849 GATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGA 1790 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 ||| ||||||||||| | ||||||||| |||||||| ||| ||| ||||||| ||| Sbjct 1789 GCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCT 1730 Query 43028 CCTGTGCCAGATGGGTCTCAGCCG--CCTCTACAACACGCCGTGCCCCTTCGACTTTATG 43085 |||| | | ||||| | | || |||||||| | ||| ||||||| ||| Sbjct 1729 GCTGTACTCGCTGGGTGT--GTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATG 1672 Query 43086 GAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 || | |||||| || ||||||||||||||||||||||||||||||| | ||| ||| Sbjct 1671 GACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTAC 1615 >seq22877 Length=809 Score = 226 bits (250), Expect = 5e-54 Identities = 511/764 (67%), Gaps = 32/764 (4%) Strand=Plus/Plus Query 244293 TGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCG 244352 ||| |||||||||||| ||||| | | |||||||| |||| ||||| | | ||| Sbjct 39 TGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCT 98 Query 244353 GGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATG 244411 ||| || ||| || ||| | || || | | || | ||||||| |||||||| Sbjct 99 CGTACGGGCCGAGTTCCTTGGCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATG 157 Query 244412 GTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATC 244471 ||||||||||| ||||||| | || |||||||| ||| ||| | | | ||| Sbjct 158 GTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATG 217 Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 | || || |||| || || ||||| ||||| || |||||||| | ||| ||| ||||| Sbjct 218 AGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTG 277 Query 244532 GA---GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 || |||| || ||| ||||||||| ||||| ||||||| |||||||| | |||| Sbjct 278 GACTTGCGC---GCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTG 334 Query 244589 CGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCT 244646 ||||||| || | || || || || | ||| ||| | | | |||| Sbjct 335 CGGGTGACCACCTTCG--TCACTTCATACAACTTCTGGTAGTTGAAAAC-------TCCT 385 Query 244647 CGGCGATGGTGATCCT-CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCC 244705 |||| ||| |||| || || || |||| |||||| || ||| Sbjct 386 ------------TCCTCCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCC 433 Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| |||| ||||||| | | ||| ||| | ||| ||| | ||| ||| Sbjct 434 ACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTG 493 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 || |||| ||| || || |||||| |||| ||||||||||| | ||| |||||| | Sbjct 494 CCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACT 553 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 || ||||||| ||||||| | | | | | ||| || | | || |||| |||| || Sbjct 554 CCCGTCTCGATCTGGGCGTCCAATATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTG 613 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 || || ||||| | |||||| || ||||||||||| ||| ||||||| | Sbjct 614 CGGGCGCGTCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCAC 673 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 || | || || ||| | ||||| | ||||||||||| ||| | | | ||| Sbjct 674 TCATAGAGTCCAGGGGCCTCGTTAGGGCAAAAGAGACTCCACTTGCCATTGGCTTCCACC 733 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 |||| |||||| || || || | ||| ||||| | ||| ||||| Sbjct 734 CTCTTCATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTC 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943900849547600