Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq7137 343 5e-90 >seq7137 Length=12292 Score = 343 bits (380), Expect = 5e-90 Identities = 855/1279 (67%), Gaps = 22/1279 (2%) Strand=Plus/Plus Query 17214 CCTGACAGCCTGCATTCGATTGCGCGCGCGAAGGTGCTCGACGTGATCTCGGCGGGGCCC 17273 || || ||| | ||||| |||||| || |||||||| || | | || | ||| Sbjct 7832 CCGGATAGCTTACATTCCATTGCGTATGCAAAGGTGCTAGATGCGGCATCCGAGGGTGAT 7891 Query 17274 ATCGTGGGGCTGGTGAATGGCCTGCAGTCGGTCTATCTCGACGGCACGCCGATCCAGAAC 17333 | ||||| |||| ||||| ||||| || | ||||||| |||||||| | ||| Sbjct 7892 GTTGTGGGATTGGTCAATGGTATGCAGAGCGTGTTTCTCGACAGCACGCCGCTTATCAAC 7951 Query 17334 GCGGACGGCTCGCTGAATTTCCAGAACTACACCGTCGACGCGCGAACCGGCACGCAGGAT 17393 | ||||| || ||||| |||||| || ||| |||| ||| ||||||||||| || Sbjct 7952 CCCGACGGGACGGCCAATTTTCAGAACGTCAGCGTTGACGTGCGCACCGGCACGCAAGAC 8011 Query 17394 CAGGACTACATCTCGGGTTTTCCGGCCGTCGAGCGTGAGGCCGGCGTCGGCGTGCCGCTG 17453 |||| ||||| | || || || | ||||| |||| | |||||||| ||||| Sbjct 8012 CAGGCTTACATTCCCGGATTCCCTTCGGTCGAAAGTGAAACATCTGTCGGCGTTACGCTG 8071 Query 17454 ACGTCCGACG-CGCCGTGGGTGCGCCAAATCCAGAATACGCAACTGACTGCGGTGCGCGT 17512 || ||| ||| | || ||||| ||| ||| || | || ||| | ||||| ||| | Sbjct 8072 ACATCC-ACGACCCCATGGGTCCGCGCGATCAGCAACGCCCAGCTGTCGGCGGTCCGCAT 8130 Query 17513 GCGCTTCGGTGTGCCGGCGCTACAGCGTCAGG---ACACGTCGAACGGCAATATCACGGG 17569 | | || ||||| || ||||| ||||| |||||| | ||||| || Sbjct 8131 CACGATGGCGGTACCGGC---ACTCTCTCAGGCGAACACGAGCAACGGCGACATCACCGG 8187 Query 17570 CTATCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGGTCGTATGCGCAGGTGCT 17629 ||| || |||| || |||||||| | ||||| | ||| || ||| | | || | Sbjct 8188 CTACCGAATCGAATACGCGATCGATCTTTCGGTTGCCGGTGGCGCGTTCCAGGAAGTCTT 8247 Query 17630 GGCCGGTGCGTTCGACGGCAAGACGACGTCGCTCTATGAGCGCTCGCATCGGATCGAGCT 17689 | | || |||||||| |||||||| ||| || || ||| || || || | | Sbjct 8248 GTCTTCGGCATTCGACGGGAAGACGACCTCGACTTACGAACGCAGCCACCGCGTCAACTT 8307 Query 17690 GCCGCGCG-CAAAAAATGGTTGGTTGATCCGCGTGCGCCGCATCACGCCGAACGCGCACA 17748 ||| |||| | ||| ||| | | | |||||||| ||||| |||||||| | | Sbjct 8308 GCC-CGCGTCGGCGTCTGGCTGGACGGTAAGAGTGCGCCGAATCACCCCGAACGCAAATA 8366 Query 17749 -CGGCGACGATCGCCGACGCGATCAACATCGAGGCGATTACCGAGATCATCGATCGGAAG 17807 | || |||||||| || ||| ||||| ||| || ||||||||||||| |||| Sbjct 8367 TCAGC-ACGATCGCTGATACGACGAACATTGAGAGCATCGCCGAGATCATCGACGCGAAG 8425 Query 17808 CTCCGCTATCCGATGACGGCGCTTGTCGGTATGACGTTCGACGCACGTTCGTTCTCGAGC 17867 || ||||| |||| |||||||| || || || | | || || | |||| |||| Sbjct 8426 CTTCGCTACCCGAATACGGCGCTGGTAGGCATTCAGGTAGATGCGCAGCAGTTCAAGAGC 8485 Query 17868 GTGCCAGTGCGTTCGTATCACGTGCGAGGGATGATCTTCCGAGTCCCGACAAACTACGAC 17927 | || || |||| || || ||| ||| |||| || || | ||||| ||| Sbjct 8486 ATCCCTACTCGGTCGTTCGACATGAAGGGGCGCATCATCCGCGTGCCATCGAACTATGAC 8545 Query 17928 CCGGAGACGCGTACGTA-CTCGGGTACATGGGACGGTACGTTCAAGGCAGCATGGACGAA 17986 || | |||||| |||| |||| | | ||||||||||| |||||| | |||||||| | Sbjct 8546 CCCGCCACGCGTGCGTATGTCGGAT-CGTGGGACGGTACTTTCAAGACGGCATGGACTGA 8604 Query 17987 CAATCCGGCGTGGGTCTACTACGGCCTACTTCTCGACAAGCTCAACGGATTGGGTGACCG 18046 ||||||||| ||||| | || | | | | | | | | | ||| | || | || Sbjct 8605 CAATCCGGCATGGGTGTTTTATGACTTGGTGTTGCATCCTCGCTATGGACTCGGCCATCG 8664 Query 18047 TGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAATCGCGCGTTACTGCGACGA 18106 || ||| | |||||| |||||| | |||||| ||||| | || |||||||| Sbjct 8665 GGTGAATGGCGCACAGGTCGACAAGTGGTCCCTGTACCAGATCGCACAGTATTGCGACGA 8724 Query 18107 ACTCGTGTCCGACGGGAAGGGCGGCAAGGAGCCGCGCTTCACCTGCAACTGCGTGCTTCA 18166 ||| || ||| || | || ||| | || ||||||||||||||||| ||| | || Sbjct 8725 ACTGGTCGACGATGGCGACGGAGGCCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCA 8784 Query 18167 GACGCGCGCGGACGCATTCAAGGTGGTACAGGATCTCGCGAGCGTCTTTCGCGGCATTTC 18226 | ||| || ||||| | ||||||| | ||||||||||||| ||||||||||| || | Sbjct 8785 GGAGCGGGCTGACGCCTACAAGGTGCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGC 8844 Query 18227 GTACTGGGGCGCCGGGTCGGTGGTCGCGTCGGCCGATATGCCGTCCGATCCGGTCTACCT 18286 ||| |||| || || || || |||| ||||| ||||||||||||| Sbjct 8845 GTATTGGGCGAATGGAAACGTTGTAGCCGTATCCGACATGCCCGGCGATCCGGTCTACAG 8904 Query 18287 GTACACGGCCGCGAATGTCGTCGGTGGTTCATTCAAGTACGTCGGCAGCGAAC-GCAAGA 18345 | |||| ||| || ||| ||| || |||| |||| ||| | ||| | | || Sbjct 8905 CTTCACGAACGCCAACGTCATCGACGGGAAGTTCACGTACACCGGTA-CGAGCTGGAAAG 8963 Query 18346 CGCGTTACACGGTCGCGCTCGTCAGCTACAACGATCCGACGAACCAGTACAAG--CAAGC 18403 | ||| | ||||| ||| | || | | ||||||||| | || || ||| ||| Sbjct 8964 CCCGTAAGACGGTTGCGTTGGTGACGTGGAACGATCCGGCCGACTTCTATAAGGCGAAG- 9022 Query 18404 TGTCGAGCCCGTGCAGGACGACGACGGGATCGCGCGATATGGCG-TCATCAAGACGGAGG 18462 |||||| ||| | || | || || ||||||| ||||||| ||| | |||| ||| Sbjct 9023 -GTCGAGTACGTCGAAGATCAGGATGGAGTCGCGCGCTATGGCGTTCAAC-AGACCGAGA 9080 Query 18463 TCACGGCGTTCGGCTGCAC 18481 || ||||| ||||| || Sbjct 9081 CGACCGCGTTTGGCTGTAC 9099 Score = 122 bits (134), Expect = 3e-23 Identities = 439/667 (66%), Gaps = 36/667 (5%) Strand=Plus/Plus Query 18921 AACGCGACGCAGTACGAGCCGGGGAAGTACGCGGCGATCGACGACGGCGCACAGATTCAG 18980 ||||||| ||| || | |||| ||||||||||| |||||| |||| | | | ||| Sbjct 9530 AACGCGATCCAGCACAATCCGGACAAGTACGCGGCTATCGACAGCGGCACGCGCTTGCAG 9589 Query 18981 CAACGGCCGATCACGATCGTTCCGCCATCGGTGCAGCCGCCGCCGTCGAACGTCC---GC 19037 ||||||||||||| || ||||||| || || ||||||||| | | | || | Sbjct 9590 CAACGGCCGATCAGTGTCATTCCGCCGTCTGTCCAGCCGCCGGCCAAGGATGTTGTGTGG 9649 Query 19038 CTCTCGACATACTCGGTGGTCGATCAGGGTATTTCGAAAACAACGATGGTGATCGCGTGG 19097 |||| || ||||| ||| ||||| ||| || || || || || |||| Sbjct 9650 GACTCG---TATTCGGTCATCGCGCAGGGCATTGCGTCGACGACTGGCGTTATTAAGTGG 9706 Query 19098 GATGCAGCGAACCACGCGACAAGCTACGTCGTCGAATGGCGGAAGGATAACGGCGAGTGG 19157 | || || | |||| |||| |||||| ||||| || |||||||||||| Sbjct 9707 ACGCCGGCTGACAAGGCGATCGCATACGACGTCGATTGGCGCCGCGACAACGGCGAGTGG 9766 Query 19158 GTGAAGG-TGCCGTCGACAGGCGGCCTGCAGGTCGAGGTGCCGGGAATC--TATCAGGGC 19214 || |||| || | | || ||| || | | |||||||| ||||| || |||| Sbjct 9767 GTTAAGGCTGGCCGC-ACTGGCTCCCAGAGCCTTGAGGTGCC--GAATCTGTACGCGGGC 9823 Query 19215 AAGTACCTCGCGCGGGTGTGCGCCGAGAACGCGCTCGGCGTGACGTCGATTCCGGCGTA- 19273 |||| ||||||| ||| || ||| ||||| | ||| | ||||| ||||| || Sbjct 9824 AAGTTTGTCGCGCGCGTGACGGCTCTGAATGCGCTTGAGGTGCCCTCGATCCCGGCCTAT 9883 Query 19274 -CGGCGTCGATACGCAACTGACCGGGAAAACCACTCCGCCGCCGTCGGTCGTGTC---GC 19329 |||| || ||| |||| || || || | || |||||| | |||| | | Sbjct 9884 TCGGC--AGAGACGGTGCTGAATGGTAAGACATCGCCTCCGCCGAC---CGTGACCAGCC 9938 Query 19330 TGACTGCGGCGGGCATCGTGTACGGGATCGATCTGAAATGGGCGTTTCCGGGTGACGGAT 19389 ||| || |||| ||||| | ||| || | | || |||| | |||| || | | Sbjct 9939 TGATGGCAACGGGGATCGTCTTCGGCATTCAGATCAACTGGG-GCTTCC---CAACTGGT 9994 Query 19390 CCGCTGGCGACACGCAGCGAACGGAGATCTGGTACAGCC-GCACGCCGA-ATCGCGACGA 19447 |||| |||| |||| || ||| ||||||| |||| | | ||| | ||| Sbjct 9995 CCGC--ACGACGTCGAGCGCACCGAGGTCTGGTATAGCCAGACCAACGACCTGTTCACG- 10051 Query 19448 CGCGACCAAGTTCTCCGACTTCGCGTATCCGCAG-GCGTCGACGTCGT-ATCAGGGGCTC 19505 |||| ||| | | |||||||| | ||||||| | | || | | || ||||||| Sbjct 10052 -GCGATTAAGCTGGCGGACTTCGCATTTCCGCAGAACACCCACACCATGAT--GGGGCTC 10108 Query 19506 GCGGTCGGGCAGGTGTTTTATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGG 19565 |||| || | ||| || ||||||||||| |||||||||| ||| || ||| ||||| Sbjct 10109 GCGGCAGGCGCGACGTTCTACTTCTGGGCGCGGCTGGTCGACAAGTCTGGAAACATCGGG 10168 Query 19566 CCGTGGT 19572 | |||| Sbjct 10169 GCATGGT 10175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155566568281320