Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_009447.1 Length=52414 Score E Sequences producing significant alignments: (Bits) Value seq7430 118 4e-22 >seq7430 Length=11454 Score = 118 bits (130), Expect = 4e-22 Identities = 213/310 (69%), Gaps = 5/310 (2%) Strand=Plus/Minus Query 29405 CAGCGCATCCGCGATCTGGTTCGTCAGGCGCTCTTGAACTTGCAGGCGCTTGGCGAAAAT 29464 |||||| || |||| || ||||||| ||||| || ||||||||||| || || Sbjct 8791 CAGCGCTTCGGCGACTTGCGTCGTCAGACGCTCCTGCACTTGCAGGCGACGCGCAAAGCA 8732 Query 29465 GTCTGCCAGCCGCTTGAGCTTCGAAATACCGACGACTTTGCCGCTCGGGATATAGCCGAT 29524 || |||| ||| |||||||||| | ||||||| |||||| | || | ||||||||| Sbjct 8731 ATCGACCAGACGCGTGAGCTTCGACAGGCCGACGATCTTGCCGTTGGGCAGATAGCCGAT 8672 Query 29525 ATGGGCCGTTCCCATGATCGCCGCCATATGGTGTTCGCAGTGCGAATAGATCGGGATATC 29584 ||| | || | | || || | |||||| |||||||| || | ||| || | Sbjct 8671 GGTCGCCTTGCCGAAAAACGGTGCGAGATGGTGCTCGCAGTGGCTGTACACCGGAATGCC 8612 Query 29585 GCGAACGATAATCCAGTCGTCGGAGCCTTCCGCGCCATCCTCGAACACCTTGAGCACTTC 29644 ||| || | ||| |||| | | || || || || ||||| |||||||||||||| Sbjct 8611 GCGCACCACGATCAGTTCGTTGTATTGCTCAGCCCCGTCTTCGAAGACCTTGAGCACTTC 8552 Query 29645 GGCCGGGTCGTGCATATAGCCCGCCGCCCA-TGACGACAACCACGCCTTGACGACTCGCT 29703 ||| || || || || || |||| ||| || || ||||||||| || ||| Sbjct 8551 GGCGGGATCCTGACCGTAACCTGCCGTCCACTGGCG----CCACGCCTTTTGCACCCGCG 8496 Query 29704 TCGGCGTTTC 29713 ||| ||||| Sbjct 8495 CCGGTGTTTC 8486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167529290655120