Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2604 105 1e-17 seq4089 104 5e-17 seq19099 93.3 9e-14 >seq2604 Length=2437 Score = 105 bits (116), Expect = 1e-17 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || | ||||||||||| | | || ||| Sbjct 2004 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 1945 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| | ||||| || ||||||||| | ||| | |||| ||| || ||||| || || Sbjct 1944 GAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGC-CTCATGTACTCCAA 1886 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| ||||||||| || || || || | | ||| | || || || | Sbjct 1885 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGA 1827 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAA 243582 ||| | || ||| | | ||| | | || || | ||| || ||||||||||| | Sbjct 1826 TCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCGGGG 1768 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| |||||||| | | | |||| ||| | Sbjct 1767 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCG 1708 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || | |||||| |||||||| || | || ||||| | || ||||| || || || Sbjct 1707 AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 1648 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| ||||| ||||| || Sbjct 1647 ACCAACTTTTTCGAGAAGCGCGT 1625 >seq4089 Length=911 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 267 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 208 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 207 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 148 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 147 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 88 Query 333494 TTTTCCCGCACCATT 333508 || || ||||| || Sbjct 87 CTTACCGGCACCGTT 73 >seq19099 Length=950 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || || || || |||||| || ||| ||| | || ||||||| Sbjct 304 TTCGTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCGAAC 245 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || ||| ||| || |||||| |||||||||||| | ||||| || | ||| Sbjct 244 TGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTG 185 Query 297554 ACGATGGTCCCTTGCAGA-GATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTA 297612 ||||| || |||| | ||| ||||| || || || ||| ||||||| || || Sbjct 184 ACGATACAGCCCTGCAAACTCTGC-TCGCCGTGATGGTACGCGGAGTGCTCTGACACATA 126 Query 297613 ACCGCTGAACTGTGCAACCTTCA 297635 ||| || ||||| ||||||| Sbjct 125 ACCAGCCAATTGTGCCACCTTCA 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102355258312250