Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2070 113 5e-20 seq5441 84.2 2e-11 >seq2070 Length=5564 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || || |||||||| || | ||||| |||| Sbjct 1079 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 1138 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | ||||| |||||||||||||| || || || || || || Sbjct 1139 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1198 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | | | | |||| ||||| || | || | ||| Sbjct 1199 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCACGTCGAGCGTGATGGT 1257 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| |||| || || |||||||| |||||| Sbjct 1258 CTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 1291 >seq5441 Length=1678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||||||| ||||| | || | || | | ||||||||||| || | Sbjct 234 ACCACCCCGCAATCTCAGCACCAAGTGCAGAGTGCTGCCGTACTGAATGTTGTAGTCCGA 175 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || | || |||||||||||||||| || ||| |||||| ||||||||| || ||||| Sbjct 174 GAGCTTTCGACCGTCTTCAAGCTGCTTACCTGCAAAAATGATCCGCTGCTGATCTGGAGG 115 Query 64336 AATTCCTTCTTTTTCTTGTAT 64356 || || |||| ||| || || Sbjct 114 GATACCCTCTTGTTCCTGAAT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499412871129400