Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq12503 136 2e-27 seq12338 98.7 5e-16 >seq12503 Length=1973 Score = 136 bits (150), Expect = 2e-27 Identities = 384/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 1897 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGTTGGCACTGAGCTGC 1838 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | || |||||| | | ||| | | |||| ||||||||| ||||| | Sbjct 1837 ATTGCTGAGGCTCAGAAGACGGAGGGCGGAGTCTGCGCCTTCATCGACGCAGAACACGCC 1778 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | ||| | | |||||| ||| || || || || | ||| || || |||| Sbjct 1777 ATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 1718 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | ||||| | || |||||||||| ||| ||| ||| ||| || | ||| Sbjct 1717 CCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 1658 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| |||||| || ||||||||||| |||||||| || || || Sbjct 1657 GACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTGCCGCGTGCGGAGCTGGAGGGTGAA 1598 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || || ||| |||||| |||| ||||| Sbjct 1597 ATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGAAAGCTC 1538 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 1537 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATTCGCCAGAAG 1478 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 | || | | | || ||| | |||| || | ||||| | |||||||| | | Sbjct 1477 GTGGGGATCAT---CTTCGGATCTCCTGAGGTTACGTCGGGTGGAACAGCTCTGCGTTAC 1421 Query 66450 TACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 66506 ||||| || || | |||| | |||| || |||| | ||||| ||||| || Sbjct 1420 TACGCGTCTGTAAGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCAG 1364 Query 66507 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 | |||||||||| ||| |||||||| | ||||||||| || || Sbjct 1363 GTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGC 1317 >seq12338 Length=2103 Score = 98.7 bits (108), Expect = 5e-16 Identities = 162/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 66482 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAA 66541 ||| | || |||||| | | ||||| ||||| ||| || ||||| ||||| ||||| Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294 Query 66542 GAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTC--CATCGTCTACGGCGAGGGC 66599 ||||||| || |||| ||| |||| | || || ||||| ||| ||||||| |||| Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGC-GA-TTTTCGACATTCTCTACGGTCAGGGT 352 Query 66600 ATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGT-TTCCCGAGGGCTCATCAAGAAGTC 66658 || || ||||| | ||| || |||| ||| || | ||| | || || ||||| | Sbjct 353 ATCTCGCGCGAAGGCGAAATCATCGATCTGGGTGTCAACGCGA-AGATCGTCGAGAAGGC 411 Query 66659 TGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAAG 66704 || ||||||| || ||| | | |||| ||||||||||||||| Sbjct 412 CGGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAG 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242360662064420