Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq11821 125 7e-24 >seq11821 Length=1105 Score = 125 bits (138), Expect = 7e-24 Identities = 191/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||||||||| || || ||||| || || ||| ||||| |||| || || ||||| Sbjct 280 GCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTA 221 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | | | |||||| || || |||| ||||| | ||| | ||||| Sbjct 220 TTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGT 161 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| || || || || || |||||| | ||| || | || |||| | Sbjct 160 ATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGC 101 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| || || || || ||| | ||||| ||| || |||| ||||| ||||| || ||| Sbjct 100 TACATTCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAAC 41 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGG 94163 || | ||||| |||||||||||||| || || Sbjct 40 GACACCGCGCGGTACGTGGACCAGGGCGGAGG 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494493555674600