Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_011216.1 Length=37635 Score E Sequences producing significant alignments: (Bits) Value seq10195 87.8 4e-13 >seq10195 Length=5087 Score = 87.8 bits (96), Expect = 4e-13 Identities = 105/138 (76%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 15595 GGCTTCGGCACCTTTGC--CGTGGCAGCGCGCAAAGCACGCACCGGCCGCAATCCGGCGA 15652 ||||||||| | || | || | ||||||| || || ||||||||||| ||| || Sbjct 5068 GGCTTCGGCTCGTTCGGTTCGGGCAAGCGCGCT--GCGCGTACCGGCCGCAACCCGAAGA 5011 Query 15653 CGGGCGAATCGATCCAGATCGCCGCCAG-CAAGGCCGTGAAATTCAAGCCCGGCAAGGCA 15711 | |||||| ||||| ||||| ||| ||| |||| ||||||| |||| | | |||||||| Sbjct 5010 CTGGCGAAGCGATCAAGATC-CCGGCAGCCAAGACCGTGAAGTTCACGGCTGGCAAGGCG 4952 Query 15712 CTGAAAGACGCCGTGAAC 15729 | || ||||| |||||| Sbjct 4951 TTCAAGGACGCTGTGAAC 4934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120257345745390