Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2604 170 2e-37 seq2070 102 8e-17 >seq2604 Length=2437 Score = 170 bits (188), Expect = 2e-37 Identities = 499/759 (66%), Gaps = 31/759 (4%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || |||||||||||| |||| |||||||| ||| ||| ||||||||| Sbjct 2357 ACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGA 2298 Query 52153 ACATTAACCTCATCGAGTACATGCAGCG--GAACGTTCCGGAACTCGAGGCGCAATACTT 52210 || ||||| | | || | |||| ||| || | || | ||||| | | ||| Sbjct 2297 ACGAGAACCTGGCCATGAACTT-CAGCAATGAA-GTGCAGGTGCCGGAGGCCCGCTGCTT 2240 Query 52211 TTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 || ||| || | ||||||| | | ||| | ||| |||| ||||||||||| Sbjct 2239 CTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTCGCTGCTCATTGA 2180 Query 52271 GCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACG-TGC 52329 | || || |||| | ||| ||| |||||| ||| |||| ||| | | Sbjct 2179 CACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT-ACGATCC 2121 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA-----GAGCGACACCGC 52384 |||| || || || || || ||||| | |||||| ||| ||| | | || Sbjct 2120 CGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGT 2061 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | ||||| || |||| ||||| || |||||| | || || || ||| Sbjct 2060 ACC-----CGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTC 2006 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 || | ||||||| | | || | | ||| | ||||| ||||||| ||| || Sbjct 2005 GTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 1946 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAA 52561 |||| |||| || ||||| || ||||||||||||| ||||||||| |||| ||| Sbjct 1945 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAA 1886 Query 52562 GACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGC 52618 | | |||| | || || |||| | | || | | || | || || Sbjct 1885 GCTG---GTGAAC---AAGCTGC---CGGAGAGCCGCGTGCACGAGATCGTGCGCGACGC 1835 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 |||| | ||||| | ||||| | | | |||| || || |||||| | |||||||| Sbjct 1834 GGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAA 1775 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 | || | ||||||| ||||||||||||| ||||| || |||||| || ||| || Sbjct 1774 CTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGG 1715 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | | ||| || ||||| || ||||| || | ||| ||| || ||||| | Sbjct 1714 TGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCA 1655 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||||||||||||||| || |||||||| Sbjct 1654 GGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1616 >seq2070 Length=5564 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 1097 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 1156 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| || || || || | Sbjct 1157 AAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 1216 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| |||| ||| | || || || ||||| || || Sbjct 1217 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTG 1276 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1277 ACGAAAATCTGCAT 1290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496032041197200