Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2070 136 4e-27 seq2604 102 8e-17 >seq2070 Length=5564 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 1063 TCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 1122 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 1123 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 1182 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| | Sbjct 1183 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCA 1241 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || ||||| ||||| || || || ||||||||||| Sbjct 1242 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 1290 >seq2604 Length=2437 Score = 102 bits (112), Expect = 8e-17 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 1782 GGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 1724 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || || ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 1723 CTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGA 1665 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 1664 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475280078472400