Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq7137 275 2e-69 >seq7137 Length=12292 Score = 275 bits (304), Expect = 2e-69 Identities = 1541/2406 (64%), Gaps = 102/2406 (4%) Strand=Plus/Plus Query 29068 CCAGACAGCCTGCATTCCGCCGCGCGCGCGAAGGTGCTCGACGCCATTTCGGAGGGGCCG 29127 || || ||| | |||||| ||| || |||||||| || || || ||||| Sbjct 7832 CCGGATAGCTTACATTCCATTGCGTATGCAAAGGTGCTAGATGCGGCATCCGAGGGTGAT 7891 Query 29128 ATCGTCGGTCTGGTGAAGGGCATGCAATCGGTCTTTCTCGATGGCACGCCGATTCAGAAT 29187 | || || |||| || || ||||| || |||||||| |||||||| || || Sbjct 7892 GTTGTGGGATTGGTCAATGGTATGCAGAGCGTGTTTCTCGACAGCACGCCGCTTATCAAC 7951 Query 29188 TCCGACGGCTCGGTCAACTTCCAGAGCTACAGTGTCGACGTCCGCACGGGCACGCTCGAT 29247 ||||||| ||| ||| || |||| | ||| || ||||| ||||| ||||||| || Sbjct 7952 CCCGACGGGACGGCCAATTTTCAGAACGTCAGCGTTGACGTGCGCACCGGCACGCAAGAC 8011 Query 29248 CAGGAGTTCATGCCGGGCTTTCCGGCGGTCGAGCGCGAATCAGCCGTAGGTGTGCCGCTG 29307 |||| | ||| || || || || ||||||| | ||| || | || || || ||||| Sbjct 8012 CAGGCTTACATTCCCGGATTCCCTTCGGTCGAAAGTGAAACATCTGTCGGCGTTACGCTG 8071 Query 29308 ACTTCCGATGCGCCGTGGGTGCGGCAGGTGCAAAACACGCAGCTGTCGGCGGTCCGTATT 29367 || ||| | || ||||| || | | ||| | ||||||||||||||||| || Sbjct 8072 ACATCCACGACCCCATGGGTCCGCGCGATCAGCAACGCCCAGCTGTCGGCGGTCCGCAT- 8130 Query 29368 CGCTTCGGCC-TGCCGGCGCTGCAAAAGAGCGATCCGGCG-ACCGGCGTGTTC---GGCT 29422 | | ||| | ||||| || || |||| | | | | ||||| || |||| Sbjct 8131 CACGATGGCGGTACCGGCACTCTCTCAG-GCGAACACGAGCAACGGCGACATCACCGGCT 8189 Query 29423 ATCGCGTGGAATATGCGATCGATCTGTCGGTCGACGGAGGCTCGTACGCACAGGTGCTGT 29482 | || | ||||| ||||||||||| ||||| | ||| ||| ||| | | || ||| Sbjct 8190 ACCGAATCGAATACGCGATCGATCTTTCGGTTGCCGGTGGCGCGTTCCAGGAAGTCTTGT 8249 Query 29483 CGTCGGCCTTCGATGGCAAGACGACGTCGCTTTACGAGCGCTCGCACCGGATCGAGTTGC 29542 | ||||| ||||| || |||||||| ||| |||||| ||| ||||| || | |||| Sbjct 8250 CTTCGGCATTCGACGGGAAGACGACCTCGACTTACGAACGCAGCCACCGCGTCAACTTGC 8309 Query 29543 CGCGCG-CCACAACCGGCTGGTTGGCCCGCGTGCGCCGCATCACGCCTAACGCACACAGC 29601 | |||| | | | |||||| || | |||||||| ||||| || |||||| | | | Sbjct 8310 C-CGCGTCGGCGTCTGGCTGGACGGTAAGAGTGCGCCGAATCACCCCGAACGCAAATATC 8368 Query 29602 -TCACTGATTGCGGACACGGTGAATATCGA-AGCGATCACGGAGGTGATTGACCGCAAGC 29659 ||| ||| || || ||| ||| || || ||| ||| | ||| | || ||| |||| Sbjct 8369 AGCAC-GATCGCTGATACGACGAACATTGAGAGC-ATCGCCGAGATCATCGACGCGAAGC 8426 Query 29660 TGCGGTATCCGATGACAGCGCTCGTCGGCATGACGTTTGACGCGCGATCGTTCTCGCAGG 29719 | || || |||| || ||||| || ||||| | | || |||| |||| | Sbjct 8427 TTCGCTACCCGAATACGGCGCTGGTAGGCATTCAGGTAGATGCGCAGCAGTTCAAGAGCA 8486 Query 29720 TGCCGGTGCGGTCGTACCACGTTCGCGGCCTGATCATTCGGGTGCCGTCGAACTACGATC 29779 | || ||||||| | || | || | ||||| || ||||| |||||||| || | Sbjct 8487 TCCCTACTCGGTCGTTCGACATGAAGGGGCGCATCATCCGCGTGCCATCGAACTATGACC 8546 Query 29780 CCGAGACGCGCACGTACTCGGGGGCATGGGACGGGACGTTCAAGCCGGCGTNNNNNNNNN 29839 ||| ||||| |||| || | |||||||| || |||||| |||| | Sbjct 8547 CCGCCACGCGTGCGTATGTCGGATCGTGGGACGGTACTTTCAAGACGGCATGGACTGACA 8606 Query 29840 NNNNNNNNNNNNTTTTCTACGACCTGCTGCTGAACGATCGCTACGGCCTCGGCAAGACGG 29899 | || || ||| || || || | |||||| || |||||| | || Sbjct 8607 ATCCGGCATGGGTGTTTTATGACTTGGTGTTGCATCCTCGCTATGGACTCGGCCATCGGG 8666 Query 29900 TCGACGCGTCGATGATCGACAAGTGGGGGCTGTACGAAATTGCGCGGTATTGCGACGTCA 29959 | | | | | ||||||||||| |||||| | || || | ||||||||||| Sbjct 8667 TGAATGGCGCACAGGTCGACAAGTGGTCCCTGTACCAGATCGCACAGTATTGCGACGAAC 8726 Query 29960 TGGTGTCGGACGGCAGAGGCGGCGTTGAACCGCGCTTCACGTGCAACTGCGTGATCCAGT 30019 |||| || ||| || ||| |||||||||||||| ||||| ||| | ||| Sbjct 8727 TGGTCGACGATGGCGACGGAGGCCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCAGG 8786 Query 30020 CGGCCGCCGACGCGTACAAGGTGCTGCAAGATATTGCCAGCGTGTTCCGCGGCATTTCGT 30079 | || ||||| |||||||||||||| ||| | || | || || ||||| || ||| Sbjct 8787 AGCGGGCTGACGCCTACAAGGTGCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGCGT 8846 Query 30080 ACTGGGGGCCGGG---TGCGGTAGTCGCTTCCGCGGACATGCCTTCCGATCCGGTCTACG 30136 | |||| | || | |||| || ||| |||||||| ||||||||||||| Sbjct 8847 ATTGGGCGAATGGAAACGTTGTAGCCGTATCC---GACATGCCCGGCGATCCGGTCTACA 8903 Query 30137 TTTACACCGCGGCGAACGTGATCGACGGGGCATTTCGC-TACGTAGGGAGCGAGC-GCAA 30194 | ||| || ||||| |||||| ||| | ||| | ||| || | ||||| | || Sbjct 8904 GCTTCACGAACGCCAACGTCATCGAC-GGGAAGTTCACGTACACCGGTA-CGAGCTGGAA 8961 Query 30195 GACGCGATACACGGTCGCGCTTGTCAGCTACAACGATCCATCGAACCAGTACAAACAGGC 30254 | || | ||||| ||| | || | | |||||||| | || || || | Sbjct 8962 AGCCCGTAAGACGGTTGCGTTGGTGACGTGGAACGATCCGGCCGACTTCTATAAGGCGAA 9021 Query 30255 GGTCGAGTACGTGCCGGACGACGACGGTATTGCGCGTTACGGCG-TCATCAAGACGCAGG 30313 |||||||||||| || | || || | ||||| || |||| ||| | |||| || Sbjct 9022 GGTCGAGTACGTCGAAGATCAGGATGGAGTCGCGCGCTATGGCGTTCAAC-AGACCGAGA 9080 Query 30314 TAACGGCGTTCGGTTGCACGTCGCAGGNNNNNNNNNNCCGGCTCGGGCGATGGCTTCTCC 30373 || ||||| || || || |||| || |||| | ||| |||| Sbjct 9081 CGACCGCGTTTGGCTGTACAAGTCAGGGGCAGGCGCAACGCGTCGGTCACTGGACGCTCC 9140 Query 30374 TGACGTCGCGCTACGAGTCGGGCACGGTGTCGTTCAAGGTCGGGATGGATGGCGTGCTGG 30433 ||| || ||| ||| | ||||||||| ||||| | || | | ||| Sbjct 9141 TGAGCAGCCGTCTGGAGACGGAGTCCGTGTCGTTCTCAATCGGGCTCGAAGAGGCAATGG 9200 Query 30434 TCGGCCCGGGCCAGGTGATC-GCGATCGCCGAT-CCGCGAAAGGCTGGTCGACGCATCGG 30491 | ||||| || ||| ||| |||| ||| |||| || ||||| ||||| || Sbjct 9201 TGTCGCCGGGTAGCGTCATCAGCG-TCGCGGATAGCGCG-CGCGCGGGTCGGCGCATTGG 9258 Query 30492 CGGGCGCATTCGCGCGGTGGCCGGCA--AC-GTCGTAACGCTCGACAAGGCGCCGACCGT 30548 ||| || | ||| ||| |||| || ||||| ||||||||| | ||||| Sbjct 9259 CGGACGAGTGAAATCGGCGGCTGGCACGACTGTCGT---TCTCGACAAG--GTCGACCAG 9313 Query 30549 TTCGCCC--GGCGAC-CGCTTCACGGCGATTCTGCCGTCGGGCATCGC-TCAGTACCGTG 30604 |||||| |||||| || || |||| || ||||| ||| ||| ||| ||| Sbjct 9314 ATCGCCCAGGGCGACGCGATT-ACGGTCATCCTGCCAAGTGGC-GCGCGGCAGACCCGCA 9371 Query 30605 CGGTGAAGTCCGTCGATGGCGACGTGCTCACGTT---GGCCGATCGCTTCGACGCGGATC 30661 | ||| | ||||| | ||| ||| ||||| | |||| | | || |||| Sbjct 9372 CCGTGCAATCCGTGGTCGGCAACGCAGTCACGGTTACGGCCAA----CTGGA--CGGAGG 9425 Query 30662 CAGTGC--CCG-GTGCTGTGTGGATGCTGGAAAACGCGGAGGTCGCGGCGCAGCTCTATC 30718 | |||| ||| || || ||| | | || | | || || | | ||||| | | Sbjct 9426 CCGTGCAGCCGCAAGCGGTTTGGGTTGTAGAGAGCACGCAGTTGAAAACTCAGCTGTTCC 9485 Query 30719 GCGTCGTGAGCGTTCAGGAAGGCG-ACGACGACGGACGCATCGAGTACACGATCACGGCG 30777 |||| ||||| | | | |||| | | | | | || | | || ||||| | Sbjct 9486 GCGTGCTGAGCATCTCGCAGGGCGAAGGTCTTCAATGGGAT-GTGAACGCGATCCAG--- 9541 Query 30778 ACGATGCACGAGCCGGGGAAATACGCGGCAATCGACGACGGCGCACAGATTCAGCAGAGG 30837 ||| | |||| || |||||||| |||||| |||| | | | ||||| || Sbjct 9542 ------CACAATCCGGACAAGTACGCGGCTATCGACAGCGGCACGCGCTTGCAGCAACGG 9595 Query 30838 CCGGTGACGGTCGTGCCGCCATCGGTGCAGGCGCCGCCGACCAACG----TGCGCGTGAC 30893 ||| | | ||| | ||||| || || || ||||||| |||| | || | | ||| Sbjct 9596 CCGATCAGTGTCATTCCGCCGTCTGTCCA---GCCGCCGGCCAAGGATGTTGTGTGGGAC 9652 Query 30894 GACGTACTCGGCAGTCGATCAGGGGATTTCCAAAACGACGATGGTGATCGCGTGGGACGC 30953 |||| |||| ||| ||||| ||| | ||||| || || || |||||| Sbjct 9653 -TCGTATTCGGTCATCGCGCAGGGCATTGCGTCGACGACTGGCGTTATTAAGT-GGACGC 9710 Query 30954 C-GCGGATAACGCCGTGACGTACCTGCCG--GAATGGAGGAAGGACAACGGCGATTGGG- 31009 | || || || || | | ||| | || || ||| | ||||||||||| |||| Sbjct 9711 CGGCTGACAAGGCGATCGCATAC--GACGTCGATTGGCGCCGCGACAACGGCGAGTGGGT 9768 Query 31010 TCAGTGTGCCGCGCACGGGTGGCCTGCAGGTCGAGGTGCCCGGGATTTAT-CAGGGGC-G 31067 | || || | ||||| || || | | |||||||| | || | | | |||| Sbjct 9769 TAAGGCTGGC-CGCACTGGCTCCCAGAGCCTTGAGGTGCC--GAATCTGTACGCGGGCAA 9825 Query 31068 GTATGTGGCCCGTGTGCGCGCGCAGAACGTGATGGGCGTTACGTCGCTGCCGG-CGATCA 31126 || ||| || || ||| || | ||| | | | | || | ||| | |||| | || Sbjct 9826 GTTTGTCGCGCGCGTGACGGCTCTGAATGCGCTTGAGGTGCCCTCGATCCCGGCCTATTC 9885 Query 31127 GCGCGGAAACGCAGCTGAAAGGCAAAACGACGCCGCCGCCGGCCGTTGCGTCGCTCAAGG 31186 | || || ||| |||||| || || || |||| |||||| |||| | || | || Sbjct 9886 G-GCAGAGACGGTGCTGAATGGTAAGACATCGCCTCCGCCGACCGTGACCAGCCTGATGG 9944 Query 31187 CCACCGGCATCGTGTTCGGGATCAACCTGGCTTGGGCGTTCCCGGGCGAC-GGTACGGCC 31245 | || || ||||| ||||| || | | |||| |||| | || ||| || | Sbjct 9945 CAACGGGGATCGTCTTCGGCATTCAGATCAACTGGGGCTTCC----CAACTGGTCCGCAC 10000 Query 31246 GGCGATACGCAGCGCACCGAGCTCTGGTATAGCC-GCACGCCGAGCCG-CGACGATGCAA 31303 | || || ||||||||||| |||||||||||| | | ||| | | ||| || | Sbjct 10001 GACG--TCG-AGCGCACCGAGGTCTGGTATAGCCAGACCAACGACCTGTTCACG--GCGA 10055 Query 31304 TCAAGCTGTCGGATTACGCGTATCCGCAG-GCGTCGACGTCCTTGCAAGGGCTCGCGGTC 31362 | |||||| |||| | ||| | ||||||| | | || || || |||||||||| Sbjct 10056 TTAAGCTGGCGGACTTCGCATTTCCGCAGAACACCCAC-ACCATGATGGGGCTCGCGGCA 10114 Query 31363 GGCCAGGTGTTCTATTTCTGGGCTCGGCTCGTCGACACGTCAGGAAACGTCGGGCCGTGG 31422 ||| | |||||| |||||||| ||||| ||||||| ||| |||||| ||||| | ||| Sbjct 10115 GGCGCGACGTTCTACTTCTGGGCGCGGCTGGTCGACAAGTCTGGAAACATCGGGGCATGG 10174 Query 31423 TATCCG 31428 |||||| Sbjct 10175 TATCCG 10180 Score = 105 bits (116), Expect = 2e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 32629 CCGTTCGTGGTGCAGGGCGGGCAGGTGTTCTTGCGCCAGGCGCTCATCGGTTCCGGCTGG 32688 ||||||||| | || ||||| || |||| | |||||| ||||||| ||||| ||| Sbjct 10667 CCGTTCGTGATTCAAGGCGGCCAAACGTTCATCAACCAGGCATTCATCGGCTCCGGTTGG 10726 Query 32689 ATCACGAACGCGATGATCGGCAGCTACATCCAGTCCGACAACTACATCGCGGGCCGGCAG 32748 ||||||||||| ||||||||| |||||| ||||| ||||||||| ||| || | | Sbjct 10727 ATCACGAACGCCATGATCGGCGACTACATTCAGTCGAACAACTACAGCGCCGGTCTTTTG 10786 Query 32749 GGCTGGCGGCTCGACAAGAGCGGATGGTTCGAGATCAA 32786 || ||||| | || ||| ||| | | ||||| ||| Sbjct 10787 GGTTGGCGTTTGGATAAGTCTGGAAGTTACGAGAACAA 10824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127489355180460