Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_013055.1
Length=39896
Score E
Sequences producing significant alignments: (Bits) Value
seq7137 275 2e-69
>seq7137
Length=12292
Score = 275 bits (304), Expect = 2e-69
Identities = 1541/2406 (64%), Gaps = 102/2406 (4%)
Strand=Plus/Plus
Query 29068 CCAGACAGCCTGCATTCCGCCGCGCGCGCGAAGGTGCTCGACGCCATTTCGGAGGGGCCG 29127
|| || ||| | |||||| ||| || |||||||| || || || |||||
Sbjct 7832 CCGGATAGCTTACATTCCATTGCGTATGCAAAGGTGCTAGATGCGGCATCCGAGGGTGAT 7891
Query 29128 ATCGTCGGTCTGGTGAAGGGCATGCAATCGGTCTTTCTCGATGGCACGCCGATTCAGAAT 29187
| || || |||| || || ||||| || |||||||| |||||||| || ||
Sbjct 7892 GTTGTGGGATTGGTCAATGGTATGCAGAGCGTGTTTCTCGACAGCACGCCGCTTATCAAC 7951
Query 29188 TCCGACGGCTCGGTCAACTTCCAGAGCTACAGTGTCGACGTCCGCACGGGCACGCTCGAT 29247
||||||| ||| ||| || |||| | ||| || ||||| ||||| ||||||| ||
Sbjct 7952 CCCGACGGGACGGCCAATTTTCAGAACGTCAGCGTTGACGTGCGCACCGGCACGCAAGAC 8011
Query 29248 CAGGAGTTCATGCCGGGCTTTCCGGCGGTCGAGCGCGAATCAGCCGTAGGTGTGCCGCTG 29307
|||| | ||| || || || || ||||||| | ||| || | || || || |||||
Sbjct 8012 CAGGCTTACATTCCCGGATTCCCTTCGGTCGAAAGTGAAACATCTGTCGGCGTTACGCTG 8071
Query 29308 ACTTCCGATGCGCCGTGGGTGCGGCAGGTGCAAAACACGCAGCTGTCGGCGGTCCGTATT 29367
|| ||| | || ||||| || | | ||| | ||||||||||||||||| ||
Sbjct 8072 ACATCCACGACCCCATGGGTCCGCGCGATCAGCAACGCCCAGCTGTCGGCGGTCCGCAT- 8130
Query 29368 CGCTTCGGCC-TGCCGGCGCTGCAAAAGAGCGATCCGGCG-ACCGGCGTGTTC---GGCT 29422
| | ||| | ||||| || || |||| | | | | ||||| || ||||
Sbjct 8131 CACGATGGCGGTACCGGCACTCTCTCAG-GCGAACACGAGCAACGGCGACATCACCGGCT 8189
Query 29423 ATCGCGTGGAATATGCGATCGATCTGTCGGTCGACGGAGGCTCGTACGCACAGGTGCTGT 29482
| || | ||||| ||||||||||| ||||| | ||| ||| ||| | | || |||
Sbjct 8190 ACCGAATCGAATACGCGATCGATCTTTCGGTTGCCGGTGGCGCGTTCCAGGAAGTCTTGT 8249
Query 29483 CGTCGGCCTTCGATGGCAAGACGACGTCGCTTTACGAGCGCTCGCACCGGATCGAGTTGC 29542
| ||||| ||||| || |||||||| ||| |||||| ||| ||||| || | ||||
Sbjct 8250 CTTCGGCATTCGACGGGAAGACGACCTCGACTTACGAACGCAGCCACCGCGTCAACTTGC 8309
Query 29543 CGCGCG-CCACAACCGGCTGGTTGGCCCGCGTGCGCCGCATCACGCCTAACGCACACAGC 29601
| |||| | | | |||||| || | |||||||| ||||| || |||||| | | |
Sbjct 8310 C-CGCGTCGGCGTCTGGCTGGACGGTAAGAGTGCGCCGAATCACCCCGAACGCAAATATC 8368
Query 29602 -TCACTGATTGCGGACACGGTGAATATCGA-AGCGATCACGGAGGTGATTGACCGCAAGC 29659
||| ||| || || ||| ||| || || ||| ||| | ||| | || ||| ||||
Sbjct 8369 AGCAC-GATCGCTGATACGACGAACATTGAGAGC-ATCGCCGAGATCATCGACGCGAAGC 8426
Query 29660 TGCGGTATCCGATGACAGCGCTCGTCGGCATGACGTTTGACGCGCGATCGTTCTCGCAGG 29719
| || || |||| || ||||| || ||||| | | || |||| |||| |
Sbjct 8427 TTCGCTACCCGAATACGGCGCTGGTAGGCATTCAGGTAGATGCGCAGCAGTTCAAGAGCA 8486
Query 29720 TGCCGGTGCGGTCGTACCACGTTCGCGGCCTGATCATTCGGGTGCCGTCGAACTACGATC 29779
| || ||||||| | || | || | ||||| || ||||| |||||||| || |
Sbjct 8487 TCCCTACTCGGTCGTTCGACATGAAGGGGCGCATCATCCGCGTGCCATCGAACTATGACC 8546
Query 29780 CCGAGACGCGCACGTACTCGGGGGCATGGGACGGGACGTTCAAGCCGGCGTNNNNNNNNN 29839
||| ||||| |||| || | |||||||| || |||||| |||| |
Sbjct 8547 CCGCCACGCGTGCGTATGTCGGATCGTGGGACGGTACTTTCAAGACGGCATGGACTGACA 8606
Query 29840 NNNNNNNNNNNNTTTTCTACGACCTGCTGCTGAACGATCGCTACGGCCTCGGCAAGACGG 29899
| || || ||| || || || | |||||| || |||||| | ||
Sbjct 8607 ATCCGGCATGGGTGTTTTATGACTTGGTGTTGCATCCTCGCTATGGACTCGGCCATCGGG 8666
Query 29900 TCGACGCGTCGATGATCGACAAGTGGGGGCTGTACGAAATTGCGCGGTATTGCGACGTCA 29959
| | | | | ||||||||||| |||||| | || || | |||||||||||
Sbjct 8667 TGAATGGCGCACAGGTCGACAAGTGGTCCCTGTACCAGATCGCACAGTATTGCGACGAAC 8726
Query 29960 TGGTGTCGGACGGCAGAGGCGGCGTTGAACCGCGCTTCACGTGCAACTGCGTGATCCAGT 30019
|||| || ||| || ||| |||||||||||||| ||||| ||| | |||
Sbjct 8727 TGGTCGACGATGGCGACGGAGGCCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCAGG 8786
Query 30020 CGGCCGCCGACGCGTACAAGGTGCTGCAAGATATTGCCAGCGTGTTCCGCGGCATTTCGT 30079
| || ||||| |||||||||||||| ||| | || | || || ||||| || |||
Sbjct 8787 AGCGGGCTGACGCCTACAAGGTGCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGCGT 8846
Query 30080 ACTGGGGGCCGGG---TGCGGTAGTCGCTTCCGCGGACATGCCTTCCGATCCGGTCTACG 30136
| |||| | || | |||| || ||| |||||||| |||||||||||||
Sbjct 8847 ATTGGGCGAATGGAAACGTTGTAGCCGTATCC---GACATGCCCGGCGATCCGGTCTACA 8903
Query 30137 TTTACACCGCGGCGAACGTGATCGACGGGGCATTTCGC-TACGTAGGGAGCGAGC-GCAA 30194
| ||| || ||||| |||||| ||| | ||| | ||| || | ||||| | ||
Sbjct 8904 GCTTCACGAACGCCAACGTCATCGAC-GGGAAGTTCACGTACACCGGTA-CGAGCTGGAA 8961
Query 30195 GACGCGATACACGGTCGCGCTTGTCAGCTACAACGATCCATCGAACCAGTACAAACAGGC 30254
| || | ||||| ||| | || | | |||||||| | || || || |
Sbjct 8962 AGCCCGTAAGACGGTTGCGTTGGTGACGTGGAACGATCCGGCCGACTTCTATAAGGCGAA 9021
Query 30255 GGTCGAGTACGTGCCGGACGACGACGGTATTGCGCGTTACGGCG-TCATCAAGACGCAGG 30313
|||||||||||| || | || || | ||||| || |||| ||| | |||| ||
Sbjct 9022 GGTCGAGTACGTCGAAGATCAGGATGGAGTCGCGCGCTATGGCGTTCAAC-AGACCGAGA 9080
Query 30314 TAACGGCGTTCGGTTGCACGTCGCAGGNNNNNNNNNNCCGGCTCGGGCGATGGCTTCTCC 30373
|| ||||| || || || |||| || |||| | ||| ||||
Sbjct 9081 CGACCGCGTTTGGCTGTACAAGTCAGGGGCAGGCGCAACGCGTCGGTCACTGGACGCTCC 9140
Query 30374 TGACGTCGCGCTACGAGTCGGGCACGGTGTCGTTCAAGGTCGGGATGGATGGCGTGCTGG 30433
||| || ||| ||| | ||||||||| ||||| | || | | |||
Sbjct 9141 TGAGCAGCCGTCTGGAGACGGAGTCCGTGTCGTTCTCAATCGGGCTCGAAGAGGCAATGG 9200
Query 30434 TCGGCCCGGGCCAGGTGATC-GCGATCGCCGAT-CCGCGAAAGGCTGGTCGACGCATCGG 30491
| ||||| || ||| ||| |||| ||| |||| || ||||| ||||| ||
Sbjct 9201 TGTCGCCGGGTAGCGTCATCAGCG-TCGCGGATAGCGCG-CGCGCGGGTCGGCGCATTGG 9258
Query 30492 CGGGCGCATTCGCGCGGTGGCCGGCA--AC-GTCGTAACGCTCGACAAGGCGCCGACCGT 30548
||| || | ||| ||| |||| || ||||| ||||||||| | |||||
Sbjct 9259 CGGACGAGTGAAATCGGCGGCTGGCACGACTGTCGT---TCTCGACAAG--GTCGACCAG 9313
Query 30549 TTCGCCC--GGCGAC-CGCTTCACGGCGATTCTGCCGTCGGGCATCGC-TCAGTACCGTG 30604
|||||| |||||| || || |||| || ||||| ||| ||| ||| |||
Sbjct 9314 ATCGCCCAGGGCGACGCGATT-ACGGTCATCCTGCCAAGTGGC-GCGCGGCAGACCCGCA 9371
Query 30605 CGGTGAAGTCCGTCGATGGCGACGTGCTCACGTT---GGCCGATCGCTTCGACGCGGATC 30661
| ||| | ||||| | ||| ||| ||||| | |||| | | || ||||
Sbjct 9372 CCGTGCAATCCGTGGTCGGCAACGCAGTCACGGTTACGGCCAA----CTGGA--CGGAGG 9425
Query 30662 CAGTGC--CCG-GTGCTGTGTGGATGCTGGAAAACGCGGAGGTCGCGGCGCAGCTCTATC 30718
| |||| ||| || || ||| | | || | | || || | | ||||| | |
Sbjct 9426 CCGTGCAGCCGCAAGCGGTTTGGGTTGTAGAGAGCACGCAGTTGAAAACTCAGCTGTTCC 9485
Query 30719 GCGTCGTGAGCGTTCAGGAAGGCG-ACGACGACGGACGCATCGAGTACACGATCACGGCG 30777
|||| ||||| | | | |||| | | | | | || | | || ||||| |
Sbjct 9486 GCGTGCTGAGCATCTCGCAGGGCGAAGGTCTTCAATGGGAT-GTGAACGCGATCCAG--- 9541
Query 30778 ACGATGCACGAGCCGGGGAAATACGCGGCAATCGACGACGGCGCACAGATTCAGCAGAGG 30837
||| | |||| || |||||||| |||||| |||| | | | ||||| ||
Sbjct 9542 ------CACAATCCGGACAAGTACGCGGCTATCGACAGCGGCACGCGCTTGCAGCAACGG 9595
Query 30838 CCGGTGACGGTCGTGCCGCCATCGGTGCAGGCGCCGCCGACCAACG----TGCGCGTGAC 30893
||| | | ||| | ||||| || || || ||||||| |||| | || | | |||
Sbjct 9596 CCGATCAGTGTCATTCCGCCGTCTGTCCA---GCCGCCGGCCAAGGATGTTGTGTGGGAC 9652
Query 30894 GACGTACTCGGCAGTCGATCAGGGGATTTCCAAAACGACGATGGTGATCGCGTGGGACGC 30953
|||| |||| ||| ||||| ||| | ||||| || || || ||||||
Sbjct 9653 -TCGTATTCGGTCATCGCGCAGGGCATTGCGTCGACGACTGGCGTTATTAAGT-GGACGC 9710
Query 30954 C-GCGGATAACGCCGTGACGTACCTGCCG--GAATGGAGGAAGGACAACGGCGATTGGG- 31009
| || || || || | | ||| | || || ||| | ||||||||||| ||||
Sbjct 9711 CGGCTGACAAGGCGATCGCATAC--GACGTCGATTGGCGCCGCGACAACGGCGAGTGGGT 9768
Query 31010 TCAGTGTGCCGCGCACGGGTGGCCTGCAGGTCGAGGTGCCCGGGATTTAT-CAGGGGC-G 31067
| || || | ||||| || || | | |||||||| | || | | | ||||
Sbjct 9769 TAAGGCTGGC-CGCACTGGCTCCCAGAGCCTTGAGGTGCC--GAATCTGTACGCGGGCAA 9825
Query 31068 GTATGTGGCCCGTGTGCGCGCGCAGAACGTGATGGGCGTTACGTCGCTGCCGG-CGATCA 31126
|| ||| || || ||| || | ||| | | | | || | ||| | |||| | ||
Sbjct 9826 GTTTGTCGCGCGCGTGACGGCTCTGAATGCGCTTGAGGTGCCCTCGATCCCGGCCTATTC 9885
Query 31127 GCGCGGAAACGCAGCTGAAAGGCAAAACGACGCCGCCGCCGGCCGTTGCGTCGCTCAAGG 31186
| || || ||| |||||| || || || |||| |||||| |||| | || | ||
Sbjct 9886 G-GCAGAGACGGTGCTGAATGGTAAGACATCGCCTCCGCCGACCGTGACCAGCCTGATGG 9944
Query 31187 CCACCGGCATCGTGTTCGGGATCAACCTGGCTTGGGCGTTCCCGGGCGAC-GGTACGGCC 31245
| || || ||||| ||||| || | | |||| |||| | || ||| || |
Sbjct 9945 CAACGGGGATCGTCTTCGGCATTCAGATCAACTGGGGCTTCC----CAACTGGTCCGCAC 10000
Query 31246 GGCGATACGCAGCGCACCGAGCTCTGGTATAGCC-GCACGCCGAGCCG-CGACGATGCAA 31303
| || || ||||||||||| |||||||||||| | | ||| | | ||| || |
Sbjct 10001 GACG--TCG-AGCGCACCGAGGTCTGGTATAGCCAGACCAACGACCTGTTCACG--GCGA 10055
Query 31304 TCAAGCTGTCGGATTACGCGTATCCGCAG-GCGTCGACGTCCTTGCAAGGGCTCGCGGTC 31362
| |||||| |||| | ||| | ||||||| | | || || || ||||||||||
Sbjct 10056 TTAAGCTGGCGGACTTCGCATTTCCGCAGAACACCCAC-ACCATGATGGGGCTCGCGGCA 10114
Query 31363 GGCCAGGTGTTCTATTTCTGGGCTCGGCTCGTCGACACGTCAGGAAACGTCGGGCCGTGG 31422
||| | |||||| |||||||| ||||| ||||||| ||| |||||| ||||| | |||
Sbjct 10115 GGCGCGACGTTCTACTTCTGGGCGCGGCTGGTCGACAAGTCTGGAAACATCGGGGCATGG 10174
Query 31423 TATCCG 31428
||||||
Sbjct 10175 TATCCG 10180
Score = 105 bits (116), Expect = 2e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 32629 CCGTTCGTGGTGCAGGGCGGGCAGGTGTTCTTGCGCCAGGCGCTCATCGGTTCCGGCTGG 32688
||||||||| | || ||||| || |||| | |||||| ||||||| ||||| |||
Sbjct 10667 CCGTTCGTGATTCAAGGCGGCCAAACGTTCATCAACCAGGCATTCATCGGCTCCGGTTGG 10726
Query 32689 ATCACGAACGCGATGATCGGCAGCTACATCCAGTCCGACAACTACATCGCGGGCCGGCAG 32748
||||||||||| ||||||||| |||||| ||||| ||||||||| ||| || | |
Sbjct 10727 ATCACGAACGCCATGATCGGCGACTACATTCAGTCGAACAACTACAGCGCCGGTCTTTTG 10786
Query 32749 GGCTGGCGGCTCGACAAGAGCGGATGGTTCGAGATCAA 32786
|| ||||| | || ||| ||| | | ||||| |||
Sbjct 10787 GGTTGGCGTTTGGATAAGTCTGGAAGTTACGAGAACAA 10824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127489355180460
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