Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2604 159 4e-34 >seq2604 Length=2437 Score = 159 bits (176), Expect = 4e-34 Identities = 391/582 (67%), Gaps = 18/582 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||| ||||| ||||| || | || ||| | ||||| Sbjct 1615 GTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 1674 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 | || || ||||||||| ||| | || | | ||| || | | | || ||||| Sbjct 1675 CCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACG 1734 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 127409 || | ||| |||| ||||||| |||| | | |||||||| ||||| || | || Sbjct 1735 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCAC 1794 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | ||||||| ||| | |||| | | ||| || ||| || || || ||||| ||| Sbjct 1795 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 1853 Query 127470 GAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAGAGTTCCACAGCA 127522 | | | | || ||| | | || || | ||| | ||| | ||| || Sbjct 1854 GCACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTGGAGTACATGAGG-----CAC-GCG 1906 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| | |||||||||||| ||| || || |||||||||| ||| || ||| Sbjct 1907 AAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGC 1966 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || | || || ||||| ||||||||||| ||| Sbjct 1967 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCC 2026 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAAACCA 127701 |||||| |||||||| | |||||||| | | || || ||| | || |||| Sbjct 2027 TCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCA 2085 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||| | |||||| || || || |||| | ||| |||| || | ||| || | || Sbjct 2086 CTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAG 2145 Query 127762 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | ||| || | | ||| ||||||||| | || ||||| Sbjct 2146 GTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613222417626600