Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2604 159 6e-34 >seq2604 Length=2437 Score = 159 bits (176), Expect = 6e-34 Identities = 476/726 (66%), Gaps = 15/726 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||||| || || || ||||| | |||| ||||| Sbjct 1630 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 1689 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||||| | || || | ||||| | ||| ||||| || || Sbjct 1690 CTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGGTCGGCCACGAACTC 1749 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | |||| || ||||||| || Sbjct 1750 GATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCACAGGGAGCGAGTCACG 1809 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| ||||| ||| ||| |||| || | || || | | Sbjct 1810 CACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCT-CGTGCACGCGGCTCTCCG 1868 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 1869 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATGCCCT 1925 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| || | | | ||||| ||||||| || ||| |||| Sbjct 1926 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGA 1985 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| || | | | | || ||||| |||||||| || || |||||| Sbjct 1986 GCCAGAAGATGG-AGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAACGCC 2044 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCATTC 160122 | || | ||| | || | || ||||| |||| ||| ||||| | Sbjct 2045 AGCAGACGCTCCGGGTACGACG----ACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 2100 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 || ||||| | ||||| || |||| ||| | || ||||| |||| | Sbjct 2101 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 2160 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 | |||||||||| || |||| ||| ||| |||| |||| ||| | || ||||| Sbjct 2161 CGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGAT 2220 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| || |||||| | |||||| | |||||| || | |||| | Sbjct 2221 GGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAAGTT 2280 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 |||| || | || || | |||||| ||| || ||||| |||| |||||| Sbjct 2281 CATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTT 2340 Query 160363 GATGAA 160368 |||||| Sbjct 2341 GATGAA 2346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794786098895600