Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2070 141 2e-28 seq22877 86.0 1e-11 >seq2070 Length=5564 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| || || Sbjct 1070 CGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 1129 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| |||||||||||||| ||||||||||| || || || Sbjct 1130 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCC 1189 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| |||| | ||| | | || || || | | Sbjct 1190 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGC 1249 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || ||||| || Sbjct 1250 GTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTG 1287 >seq22877 Length=809 Score = 86.0 bits (94), Expect = 1e-11 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 ||||||||||| | || ||||||| || ||| || || |||| ||| | | Sbjct 527 GCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCGAAC 586 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | ||||| || | || | | || | ||| || | ||||| | |||||| Sbjct 587 CACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTCATAG 646 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 ||| | ||||| || | || | || | || || || || || || || |||||| Sbjct 647 AGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAAAAG 706 Query 167948 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 168007 |||||||| || |||| || || |||||||||||||| || || | ||||| ||| Sbjct 707 AGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGCG 766 Query 168008 TAGAACA 168014 ||||||| Sbjct 767 TAGAACA 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178360678313045