Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2604 302 4e-77 seq2070 156 4e-33 seq9309 98.7 1e-15 >seq2604 Length=2437 Score = 302 bits (334), Expect = 4e-77 Identities = 574/833 (69%), Gaps = 24/833 (3%) Strand=Plus/Plus Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 || |||||||| ||||| ||||| || || || |||| || || || | ||| Sbjct 1616 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 1675 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTG 132729 | || || ||||| | ||||||| ||| | | ||| | ||||| | | Sbjct 1676 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGG 1735 Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 |||||||||||||||||||| || ||||| | | || | || | ||| ||| Sbjct 1736 TCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCACA 1795 Query 132790 GGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT 132848 || |||| || | ||| ||| ||||||| | ||||||||| ||||| || Sbjct 1796 GGGAGCGAGTCACGCACGAACTCGT-GCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 1854 Query 132849 AACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAA---CATCAAGCAAGCAA 132901 ||||| || ||| ||| | ||| ||||| ||||| | ||| | ||| || | Sbjct 1855 CACGCG----GCTCTCCGGCAGCTTGTTCACCA---GCTTGGAGTACATGAGGCACGCGA 1907 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 |||| |||| ||||||||| | | || || ||||| ||| ||| ||| |||| Sbjct 1908 AGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 1967 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||||||||| || |||||||| || |||| | ||| |||||| ||||||| ||||| Sbjct 1968 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 2027 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCAG 133080 | || || ||||| |||| ||| ||||| | ||| | || || || || ||| Sbjct 2028 CCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTC-GCGGGTCGCACCAC 2086 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 |||||||| | || || | || || ||||| ||||| |||||||| || || Sbjct 2087 TTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCA-- 2144 Query 133141 CGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTTCC 133197 || | | || |||| | | | | ||| ||||| ||||| |||||||| || Sbjct 2145 -GGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCT 2203 Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGC 133257 ||||| | |||||| |||||||| || || ||||| ||||| || ||||| ||||||| Sbjct 2204 GAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGC 2263 Query 133258 ACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAA 133317 ||||| | ||| | | |||| || ||||| ||||||||||||||||| ||||| Sbjct 2264 ACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAG 2323 Query 133318 AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGC 133377 ||||||||||||||||||||||| ||||||||||| ||| | | ||||||| | Sbjct 2324 AAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTC 2383 Query 133378 GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 ||| | |||||||| ||||||| | ||||| ||||| ||||| || || Sbjct 2384 AGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCCTT 2436 >seq2070 Length=5564 Score = 156 bits (172), Expect = 4e-33 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || ||||| |||||||| |||||||| ||||||| ||| | Sbjct 1294 AACAATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 1235 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||| | | |||| | || | || || | ||||| ||||| || || ||| Sbjct 1234 GTCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCG 1176 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| ||||| | ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 1175 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACT 1116 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| ||||| |||||||||| |||||||||| Sbjct 1115 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 1076 >seq9309 Length=2487 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 1055 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1114 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||||| |||||||||||||| ||||| ||| |||||||| ||||||| ||| || | Sbjct 1115 ACCCTTTCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTTCGTCTGCG 1173 Query 38465 AGGCGG 38470 || || Sbjct 1174 TGGTGG 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499940626038400