Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq31820 232 8e-56 seq36575 158 2e-33 seq32571 158 2e-33 seq23032 145 1e-29 seq15200 111 2e-19 seq18074 109 7e-19 seq8442 93.3 5e-14 >seq31820 Length=591 Score = 232 bits (256), Expect = 8e-56 Identities = 383/547 (70%), Gaps = 7/547 (1%) Strand=Plus/Plus Query 7265 GTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGT 7324 ||||||| | | ||| || | ||||| | |||||||| || |||| | ||| Sbjct 1 GTAATGGTCGAGTTGAAGTCGATACCGTCCAACAACGAATCGATCTCAAGATACGCTTGC 60 Query 7325 GCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCA 7384 |||| | || | ||||||||| |||||||| |||||||| || | |||||| | ||| Sbjct 61 GCCGAAGTGGACAGCGTTCGCTTCGCGCGCTCGCACGCCGTACGGAGACGACGCATCGCA 120 Query 7385 CGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT-TCAGAGAAGTG-TC 7442 |||| ||| |||| | ||| || || || || || || || ||| ||||| || Sbjct 121 CGCGAGTTCCCGGTTAGATCCTTGCGGTGCTTGCGCTTGAATTCGGTCAC-GAAGTACTC 179 Query 7443 GAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGA 7502 || || | || || ||||| ||||||||||| || || || ||||| || || | Sbjct 180 GACC-AGACGGTTGTCAAAGTCTTCGCCACCCAAGTGCGTGTCGCCTGCGGTGGCCTTCA 238 Query 7503 CTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGT 7562 | || ||||| ||| |||| || | | | ||| || |||||||| || || ||||| | Sbjct 239 CCTCGAAGATGCCTTCTTCGATCGTAAGGAGCGAGACGTCAAACGTTCCGCCTCCCAGAT 298 Query 7563 CAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCG 7622 |||| || || ||||| ||| || | ||||| || || ||||| || || || | Sbjct 299 CAAAGATCAGCACGTTGTGCTCGCCGCC---CTTCTTGTCCAGGCCGTAGGCAATGGCAG 355 Query 7623 CCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTT 7682 | ||||| || || || || ||||| || |||||| ||||| |||| | || || | Sbjct 356 CAGCCGTCGGCTCGTTGATGATACGCAGGACGTTCAGCCCAGCGATAGCGCCAGCGTCCT 415 Query 7683 TCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA 7742 |||| ||||| || ||||| ||||| || || ||||| ||||| || || || | | | | Sbjct 416 TCGTAGCTTGGCGCTGCGAGTCGTTGAAATACGCCGGCACCGTCACCACGGCATTCTTCA 475 Query 7743 CTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAA 7802 ||| ||| |||| |||| || ||||| || ||| ||| | || ||||| || || | Sbjct 476 CTTGCTTGCCGATGTACGCCTCGGCGATCTCGCGCATCTTGATCAGCACCATGGACGAGA 535 Query 7803 TCTCTTC 7809 |||| || Sbjct 536 TCTCCTC 542 >seq36575 Length=508 Score = 158 bits (174), Expect = 2e-33 Identities = 338/504 (67%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || || || || ||||||||||| ||||| |||| || | |||||| || ||| ||| Sbjct 7 GTCTCCAGACCCAGAGACAGAGGAGTCACATCCAGCAGCAGCAGGTCCTG--CAGCTTC- 63 Query 7004 TTCC-------CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 ||| | | || | | ||||| || ||||| || || ||||| ||||| || Sbjct 64 -TCCGAGGAGTCGTTGCCGCTCAGAATGGCAGCCTGGACGGTGGCACCGTAGGCGACAGC 122 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTG 7116 |||||| ||||| |||| || || | || || ||||| || | ||||| | || || Sbjct 123 CTCATCAGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCCGACAGCAGCTG 182 Query 7117 TTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTT 7176 || | || ||||| || || || |||||||||| |||| || | ||| | || Sbjct 183 CTGCACCTTGGGGATACGGGTGGAGCCACCGACCAGGACGACCTCGTGCACCTGGCTCTT 242 Query 7177 ATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTC 7236 | ||| | ||| || || || || || || ||||| || ||||| |||| Sbjct 243 GGACAGCTTGGCGTCACGGAGGACCTTCTCCACGGGCTCCATGGTCTTGCGGAAGTAGTC 302 Query 7237 CATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTA 7296 |||| ||||| ||||| |||||||| |||| | | ||| |||| ||| ||| | Sbjct 303 GCCGCACATGTCCTCGAAACGAGCACGGGTGATGGTCGAGTTGAAGTCAATGCCATCGAA 362 Query 7297 TAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTC 7356 | || || || |||||| | || |||| ||| || | ||| ||||| || ||||| Sbjct 363 CAGAGAGTCGATCTCAATGTAAGCCTGGGCCGACGACGAAAGCGTACGCTTAGCACGCTC 422 Query 7357 ACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTT 7416 || || ||||| | |||||| || || ||| |||| | | || || || || || Sbjct 423 GCAAGCAGTTCGCAGACGACGGAGAGCGCGCTGGTTCTCCGTGATGTCCTTGCGGTGCTT 482 Query 7417 ACGTTTAAACTCTTCAGAGAAGTG 7440 || || ||||| | | |||||| Sbjct 483 GCGCTTGAACTCCTGCGTGAAGTG 506 >seq32571 Length=576 Score = 158 bits (174), Expect = 2e-33 Identities = 159/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| || ||||| ||||||| || ||||| | || |||||| || ||||||||| Sbjct 569 CCGATGAGGCGCTTGACATCAAACACCGTGTTGTGGGCGTTCATAGCCACTTGGTTCTTG 510 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 ||||| || ||||| ||||| || ||| |||| ||||| |||||||| ||||| || Sbjct 509 GCCGCATCACCGATCAGACGCTCGGTAT---CCGTGAACGCCACGTACGACGGGGTGGTG 453 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || ||||| || || || || || ||||||||||| ||||| || || |||||| Sbjct 452 CGGTTGCCCTGGTCATTGGCGATGATCTCCACGCGGTCGTTCTGCCACACACCAACGCAC 393 Query 8117 GAATACGTTGTTCCTAAATCAATACC 8142 || ||||| || || | |||||| || Sbjct 392 GAGTACGTCGTGCCCAGATCAATGCC 367 >seq23032 Length=804 Score = 145 bits (160), Expect = 1e-29 Identities = 463/711 (65%), Gaps = 13/711 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||||| || || ||||| ||||| || |||||| || || || || | ||| Sbjct 92 TCATCTTGGTCCTTGTACTTCTCCGCGTCGGAGACCATGCGATCGATCTCGTCCTGCGAC 151 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || ||| || |||||||| ||||| ||||| | || |||| | ||| || | Sbjct 152 AGTCGCCCTTTGTCATTCGTGATCGTGATCTTGTTCTCCTTGCCCGTCGACTTCTCCACG 211 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||||||| || || |||||||||||||| |||| | || || || | Sbjct 212 GCTGACACGTTCAAAATGCCGTTGACATCAACATCGAACGTTACGTCGATCTGCGGGACA 271 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || || || || | || || | || |||| | || || Sbjct 272 CCGCGAGGCATGGGCGGGATGCCGTCCAGATTGAACTTTCCCAGTAGATGATTGTCACGG 331 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | | || || || || | || | ||| |||| | | || || ||| | Sbjct 332 GTCATTGTGCGCTCGCCCTCGAACACCTGAATCAACACCCCGGACTGGTTGTCTGCATAC 391 Query 6869 GTTGAGAA-GATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 || ||||| || | |||| ||| || ||||||||||| || | ||| || | || Sbjct 392 GTCGAGAACGACTGCGTCTT-CTTGGAAGGAATCGTCGTGTTACGCGGGATGAGTTTCGT 450 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | ||||| || || | ||||| ||||| || | |||||||| |||| ||| Sbjct 451 CATGACTCCACCAGCGGTCTCCAACCCAAGCGACAGCGGGGCCACGTCCAGCAGTAGCAG 510 Query 6988 GTCTTGAACAGATT--CGTTCCCTTCA---CCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 || || || || || | ||| || ||| ||| |||||||| || || || Sbjct 511 ATCCTG--CAACTTGGCGGACGAGTCATTGCCACTTAGGATAGCGGCTTGCACGGTGGCT 568 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 || || ||||| || || || ||||| |||| || ||| || || || || ||| | Sbjct 569 CCATAGGCGACTGCTTCGTCCGGGTTGATCGACTTGAACAGCTCCTTGCCATTGAAAAAG 628 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 ||| |||| || || | ||||||||| || ||||| || ||||||| ||| | || Sbjct 629 TCCATCAACAACTGCTGCACTTTCGGGATACGAGTCGACCCTCCGACCAGAACCACCTCG 688 Query 7163 TTCACTTTCGATTTATCG--ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC 7220 ||||||| | | ||| | ||| ||||| || | | | ||||| ||||| Sbjct 689 TTCACTT--GGCTCTTCGACAGCTTCGAGTCCCGCAACACCTGCGCCACAGGGTCCATCG 746 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGG 7271 || ||||| || || | ||||| ||||| || || ||||| ||||||| Sbjct 747 TCTTGCGGAAGAACTCGTTGCACAGATCCTCGAACCGAGCACGCGTAATGG 797 >seq15200 Length=1262 Score = 111 bits (122), Expect = 2e-19 Identities = 269/405 (66%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| |||| ||| || || || ||| || || || || | ||| Sbjct 583 TCGAAGTCCTCACCGCCCAGGTGGGTGTCACCGTTGGTGGCCAGCACCTCGAACACACCG 524 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || |||||| | || | ||||| || ||||| ||||||||||| || | || ||| Sbjct 523 CCGTCAATGGCCAGCAGAGTCACATCGAAGGTACCGCCACCCAGGTCGAAGACCAGGACG 464 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | | ||||| || | ||||| || || || || ||||| || || Sbjct 463 TTCTTCTCACCCTGCGACTTCTTGTCAATGCCGTAGGCAATGGCAGCAGCCGTAGGCTCG 404 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | || | | || || ||||| || | ||||| || || || || || Sbjct 403 TTGATGATGCGCTGCACCG-TGAGACCGGCAATGGTACCGGCATCCTTGGTAGCCTGACG 345 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||| || ||||| ||||| ||||| || | |||| Sbjct 344 CTGGGCGTCGTTGAAGTAGGCGGGCACCGTCACGACGGCGTCGAACACCTCGCGGCCGAT 285 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || |||| ||| | ||||| ||||| || ||||| | || | ||| || | || Sbjct 284 GTAGCCCTCCGAGATCTGCTTCATCTTGGTGAGCACCATGGCCGAGACCTCCTCGGGGGC 225 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 ||||| | | || || || | || || ||||| | ||| || Sbjct 224 GAACTGGCGCTTCTCGCCCTTGACCTCCACCTCAATGAAGGGCTT 180 >seq18074 Length=1002 Score = 109 bits (120), Expect = 7e-19 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 22579 GAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCACGAATCACCGAGACGG 22638 ||| | ||||| |||||||| || || || | |||||||||||| || |||| Sbjct 776 GAAGCCTACGGCATGTTTGCCGTGAACGGGATTTTATTCAACCACGAAAGTCCCCGACGT 717 Query 22639 GGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAATATCAGTGCAGGTAAA 22698 || || |||||| || || || || || | | ||| | ||| |||| |||| Sbjct 716 GGCCCAACCTTCGTCACTCGCAAGATCACCCGAGCTGTTGTGCGTATTCGTGCTGGTATT 657 Query 22699 CAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCATGCACGCGAT 22758 | || || | | | || ||||| || ||||||||||| ||||| || || ||||| Sbjct 656 GAGAAGTGCCTCTTTGTGGGGAACCTCGACGCGAAACGAGACTGGGGCCACGCTCGCGAC 597 Query 22759 TACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTTGTTATTGCA 22818 |||||| | || |||||| ||| | ||||| |||| ||||| ||||||||| |||| Sbjct 596 TACGTGGAGTGCATGTGGCGAATGCTTCAACATGATACTCCGGATGATTTTGTTGTTGCT 537 Query 22819 ACAGG 22823 || || Sbjct 536 ACTGG 532 >seq8442 Length=2449 Score = 93.3 bits (102), Expect = 5e-14 Identities = 317/487 (65%), Gaps = 13/487 (3%) Strand=Plus/Plus Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || ||||||| | || || ||| | ||||| || || | | ||| ||| || ||| Sbjct 1624 CCGGCAATAGCACCAGCTTCCTTCATGGCTTGACGCTGGAAGTAGTTGAAGCAGCCCGAC 1683 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || |||| ||||||| | | || | || || || || | ||||| | || ||||| Sbjct 1684 ACTGTTATAACCGCGTACTTTACCTCTTTGCCTAGGTAGGTCTCCGCCGTCTCCCTCATT 1743 Query 7781 TTGGTAAGAACCAT--CGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAA 7838 || || | ||| |||||| |||| | | | ||||| ||| |||||||| || Sbjct 1744 TTATACAGCAGCATGGCGATGA--TCTCCACCGGCTCAAACGTTTTGGTTTCACCCTTGT 1801 Query 7839 AATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTT 7898 | | ||| | | | ||| ||||| | | || | |||| | ||| ||||| | Sbjct 1802 ACTGAACCACCACCTGGGGACTATCCTCTGGCCCACGCGCCACCTCAAACGGCCAATACT 1861 Query 7899 TCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCAT--C 7956 | || | || || || | | | ||||||||||||| ||||| | | ||||| | Sbjct 1862 TGATGTTCTCCTGCACTTCTGGATCCGAAAACTTTCGGCCGATTAATTG--GTGCATGCC 1919 Query 7957 AAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACG 8016 || | |||||| | | |||| | |||| ||| || || || ||||| |||| Sbjct 1920 GAAGATTGTGTTCCTTGCGTTCCTAATCATTTGACACTTGGCAGCTTCACCGATCAGACA 1979 Query 8017 TTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGAT-TCCCTTGGTCGTTCG 8075 || || ||||| ||||| || ||||| || |||| || ||||| | ||| | Sbjct 1980 CGCAGTA---TCCGTGAACGCCACATACGACGGCGTCGAGAAATATCCCTCTCT-GTTAG 2035 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 ||| || || ||||| || | |||| ||||| || | ||| |||| || || | || Sbjct 2036 GAATTATCTCCACGCGCTCATCGCGCCACACGCCCACACGTGAACACGTCGTGCCCAGAT 2095 Query 8136 CAATACC 8142 |||| || Sbjct 2096 CAATGCC 2102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634837979293400