Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq25716 131 2e-25 seq2604 96.9 4e-15 >seq25716 Length=729 Score = 131 bits (144), Expect = 2e-25 Identities = 339/510 (66%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | ||||| || || | ||||| Sbjct 137 ATCTGCCGGTCGAATCGACCGGGACGCAGAATGGCCTTGTCAAGGATGTCAGCGCGGTTC 196 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || || Sbjct 197 GTACCAGCAAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCAACCAGC 253 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 | |||||| | ||| | ||||||||| |||||| | | | | |||| ||| | Sbjct 254 AACTGGTTTAGCGTGTTTTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTAC 311 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| ||||| ||||| ||||| ||||| ||||| || || || | Sbjct 312 GTGCGCGGGCCACAGCATCAATTTCATCAATGAACACGATGCACGGGGCATTTGCGCGCG 371 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || ||||| ||||| || || ||||| ||||||||||| | ||| | Sbjct 372 CCTCCTTGAACAGGTCACGCACACGGGACGGCCCCACACCGACGAACATCTCGATGAAAT 431 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | |||| | ||||| |||||| ||| | | ||||||||| | || || || Sbjct 432 CCGAACCAGAGATGCTGAA-GAAGGGCACACTGGCCTCACCAGCCGTAGCCTTCGCCAGC 490 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||||||||| || | || | | || ||||| |||||| || |||||| Sbjct 491 AGCGTCTTACCCGTACCGGGAGGTCCGACTAACAGCGCGCCCTTGGGGATTTTCGCACCA 550 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || ||||||||||| | |||| | |||| |||| Sbjct 551 AGCTCGGTGAAGCGCTTCTGGTTGCGAAGGAAGTCCACGAACTCCATGATCTCCTTCTTG 610 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAA 11997 || ||| | ||| | ||||| ||||| Sbjct 611 GCCTCGTCCACACCGGCCACATCCTTGAAA 640 >seq2604 Length=2437 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/253 (69%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||| ||||| || ||||| || ||||||||||| || | ||||| ||||| ||||| Sbjct 1936 GATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 1995 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || || || || || |||||||||||||||||| ||||| || | |||||||| Sbjct 1996 GGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTC 2055 Query 119648 AGCAAAAGGTCGAGACT----TGTCGAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTA 119703 | | | ||| ||| |||| |||||||||| ||||||| || || || | Sbjct 2056 CG-GGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCA 2114 Query 119704 TGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCACCATCCTTAATAT 119763 || |||| || | |||||| | || || | ||| || | ||||||| || | Sbjct 2115 CACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGT 2174 Query 119764 ATTTATCAATGAG 119776 | | |||||||| Sbjct 2175 ACGTGTCAATGAG 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588702604703000