Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq22877 105 1e-17 >seq22877 Length=809 Score = 105 bits (116), Expect = 1e-17 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||||||| | ||| | ||||| ||||||||||| ||| ||| |||||| | ||| Sbjct 771 TTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGG 712 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || || || || || || || || |||||||| |||| | || ||| |||||| Sbjct 711 AGTCTCTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTGGGGCGACGAATTCGAG 652 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 | || ||||||| ||||| | |||||| | ||| ||| | || ||||| | Sbjct 651 GCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACGATCAACGCCCAGCAG 592 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| ||| | | |||||| ||||| ||| |||||||||| |||||| Sbjct 591 CTGTGGTTCGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAG 532 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 || || | |||||| |||||| ||||| Sbjct 531 GACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108953717322545