Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq3647 89.7 9e-13 >seq3647 Length=24800 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/154 (74%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 16040 TGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 16099 |||||| || || || | |||| || ||||| ||||||||| ||||||||||| Sbjct 8309 TGGTGGGCCTCCCGCGAGTCGAACGCGGCACCAACGAATTATGAGTTCGCTGCTCTAACC 8368 Query 16100 --GTCTGAGCTACGGGGCCGGAATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAG 16157 | ||||||| || || ||||| | | | | ||| ||||||| | |||| | || Sbjct 8369 AAGCATGAGCTAGAGGCCCTT--TGGCGGGACGTGCCGGAATCGAACCAGCGACCCACAG 8426 Query 16158 CTTAGAAGGCTACTGCTCTATCCA-CTGAGCTAA 16190 ||||||||||| ||||||||||| ||||||||| Sbjct 8427 CTTAGAAGGCTGTTGCTCTATCCATCTGAGCTAA 8460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910671481368200