Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq25497 134 5e-27 seq4411 134 5e-27 >seq25497 Length=733 Score = 134 bits (148), Expect = 5e-27 Identities = 233/330 (71%), Gaps = 13/330 (4%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 ||||||| || |||||||| ||||||||| | || | ||||||||| | |||| Sbjct 521 ACGGAAAACTCTCGTGCCAGCTGTACCAGCGCTCGGGCGATATTTTCCTCGGCATCCCGT 462 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTC---GGACTGA 24936 |||||||||| |||||||| ||||| |||||| | |||| |||| || || ||| Sbjct 461 TCAATATCGCCAGCTACGCACTGCTCACCCATATGATCGC---CCAGGTCACCGGGCTGG 405 Query 24937 AGGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGC 24996 | || ||||||||| | ||| ||||| | |||||||||||||||||| |||| | Sbjct 404 AAGTGGGCGAATTCGTGCATACCCTGGGCGATGCGCACCTGTATTCGAACCACATCGAAC 345 Query 24997 AGGCGACCGAA-CAACTGTCGCGCACGCACACGGGC-TATCCGTGGCTGGCGCTGAATC- 25053 | ||| | ||| || ||| ||||| || | || || | ||| ||||| |||||| | Sbjct 344 AAGCG-CAGAAGCAGCTGGCGCGCGAGC-CGCGTGCGTTGCCGAAGCTGGTGCTGAACCC 287 Query 25054 -ACCGCGACTCG-ATCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCC 25111 | || | |||||||| | | | ||| || || || ||| |||| || Sbjct 286 GGAAGTGAAGAGCATCTTCGATTTCCGCTTCGAGGATGTGTCGATCGTCGACTACGATCC 227 Query 25112 GCACCCGGTCATCAAGGCCCCCGTGGCCGT 25141 |||||||| |||||||| || || ||||| Sbjct 226 GCACCCGGCGATCAAGGCACCTGTCGCCGT 197 >seq4411 Length=21687 Score = 134 bits (148), Expect = 5e-27 Identities = 233/331 (70%), Gaps = 16/331 (5%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||| || ||||||||| || || || || |||||| | |||||||| ||||||| Sbjct 3489 ACGGCAAGTTGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGT 3430 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| |||||||| || |||| ||| | | ||| | || ||| ||| | | Sbjct 3429 TCAACATCGCCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATG 3370 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAG- 24998 | ||||| |||||||||||||| |||||| ||| ||||| || ||| |||| ||| Sbjct 3369 TGGGCGACTTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGG 3310 Query 24999 -GCGACCGAACAACTGTCGCGCACG-----CACACGGGCTATCCGTG-GCTGGCGCTGAA 25051 || | || || || ||||| || | | | | | | | || | | |||| | Sbjct 3309 TGCAAACG--CAGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCA- 3253 Query 25052 TCACCGCGACTCGATCTTCGAGTACACCGCCGACGACGT-CATATTCCTCGGCTACCGGC 25110 | | ||| ||||||||||| |||| ||| ||| | |||| || |||| ||| Sbjct 3252 --AGCCCGATTCGATCTTCGATTACAAGTTCGAGGACTTCCATA-TCATCGGATACGAAG 3196 Query 25111 CGCACCCGGTCATCAAGGCCCCCGTGGCCGT 25141 |||| ||| |||||| || || |||||||| Sbjct 3195 CGCATCCGCACATCAA-GCGCCGGTGGCCGT 3166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164100403386480