Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq22515 161 8e-35 seq25497 143 2e-29 >seq22515 Length=820 Score = 161 bits (178), Expect = 8e-35 Identities = 301/436 (69%), Gaps = 12/436 (3%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| || || || | || || ||||| || || || | |||| Sbjct 471 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 412 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 411 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 352 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 351 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 292 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || | ||| |||||| |||||| ||||| || | |||||||||| || || ||||| Sbjct 291 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 233 Query 30031 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 30085 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 232 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 176 Query 30086 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30144 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 175 TGTGCGCAGCT--TGTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 118 Query 30145 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30204 || |||||||||||||| |||||| ||||| | ||||||||| ||||| |||||||| Sbjct 117 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 58 Query 30205 AGGTCTCCCTCTTCCC 30220 ||||| || |||||| Sbjct 57 AGGTCGCCAACTTCCC 42 >seq25497 Length=733 Score = 143 bits (158), Expect = 2e-29 Identities = 180/243 (74%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCG---GTTCCACGTGATCCAGGTAGACGTGAGCG 29835 ||||| | | | ||||| |||| ||| |||| | ||| | | || | ||| || Sbjct 317 GGCTCGCGCGCCAGCTG---CTTCTGCGCTTGTTCGATGTGGTTCGAATACAGGTGCGCA 373 Query 29836 TCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTAC 29895 || |||||||| || || || || ||| ||| ||||||||||| || || ||||| | Sbjct 374 TCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGATCATATGG 433 Query 29896 GTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTC 29955 ||||| || | |||||||||||| || || || | ||||| || || ||||| | | Sbjct 434 GTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCCCGAGCGC 493 Query 29956 TGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACATGGTGTGGCA 30014 ||||| ||||| |||||||| | |||| |||| |||||| ||||| ||||||||||||| Sbjct 494 TGGTACAGCTGGCACGAGAGTTTTCCGTTCGC-CACGTAGAACTGGAACATGGTGTGGCA 552 Query 30015 CGG 30017 ||| Sbjct 553 CGG 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408432666697355