Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq35188 143 5e-29 >seq35188 Length=529 Score = 143 bits (158), Expect = 5e-29 Identities = 265/382 (69%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 22976 CTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCG 23035 |||| || ||||| |||||||| | || || |||||| ||||||||| |||| Sbjct 374 CTTCGTCGGATTCGAAGAACAGCACCTGAGCCACGCCTTCGTTGGCGTAGATCTTGGCCG 315 Query 23036 GGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCG 23095 | || || || || || || ||||| || | ||||| |||||| ||||| | || Sbjct 314 GCAGCGGCGTCGTGTTCGAGAATTCCAGGGTCACGTAGCCTC-CCATTCGGGTTCGAACG 256 Query 23096 GCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTA 23155 |||| ||||| |||||||||||||| || ||||||||||| ||||| || || | | Sbjct 255 GCGTTACGTTCACGATGATGCCGCAGCGGGCATACGTCGACTTGCCCAGACACACGGTCA 196 Query 23156 ATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCG 23215 |||| ||||| ||| ||||| || ||| || || ||||| |||||||| Sbjct 195 GTACGCTGCGCGGGATGCGGAAGTACTCGACGGTGCGCGCGAGCGCGAACGAGTTCGGCG 136 Query 23216 GAATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAAT 23275 ||||||| | | | || | | | |||| | | || | | || || || ||| | Sbjct 135 GAATGATGCAGACATCGC--TCTCG-ACGT-CGAC--AAAGGACTTCTCGTC---GAAGT 85 Query 23276 TCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAAC 23335 |||| |||||||| | || || | ||| ||||| ||||||||||| | || | Sbjct 84 TCTTCGGATCGACGATCGTCGAGTTGATGTTCGTGAAGACCTTGAATTCAGGCGCACAGC 25 Query 23336 GAATATCGTAGCCGTAGCTGGA 23357 |||| |||||||||||||| || Sbjct 24 GAATGTCGTAGCCGTAGCTCGA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897176948270800