Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq7137 131 4e-26 >seq7137 Length=12292 Score = 131 bits (144), Expect = 4e-26 Identities = 347/525 (66%), Gaps = 15/525 (3%) Strand=Plus/Plus Query 33364 TGCGCAGGCTCACCCCGAACGCGAACAGC-GCACGCATCGGCGACACCATGATGCTGGAA 33422 ||||| | ||||||||||||| || | | ||||| |||| || || | || | || Sbjct 8340 TGCGCCGAATCACCCCGAACGCAAATATCAGCACG-ATCGCTGATACGACGAACATTGAG 8398 Query 33423 AGCTACACCACCATTATTGACGCGAAGCTGCGCTATCCGAACACCGCCTTACTCTACATG 33482 ||| | || || || ||||||||||| ||||| ||||| || || | | ||| Sbjct 8399 AGCATCGCCGAGATCATCGACGCGAAGCTTCGCTACCCGAATACGGCGCTGGTAGGCATT 8458 Query 33483 GAATTTGATTCGAGCCAGTTTAACGGCTCTATTCCGCAAATC--TCCTGCGAGCCGCGCG 33540 | | ||| || ||||| || || ||| | | || || | ||| | | Sbjct 8459 CAGGTAGATGCGCAGCAGTTCAAGAGCA----TCC-CTACTCGGTCGTTCGACATGAAGG 8513 Query 33541 GGCGTGTCATTCGCGTTCCTGCGAACTATGACCCCGACACCCGCAGCTATACCGGCACCT 33600 |||| |||| ||||| || ||||||||||||||| ||| || ||| ||| | | Sbjct 8514 GGCGCATCATCCGCGTGCCATCGAACTATGACCCCGCCACGCGTGCGTATGTCGGATCGT 8573 Query 33601 GGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTACGACCTGG 33660 |||| || || || || ||| ||||| || || ||||| ||||||||||| ||| ||| Sbjct 8574 GGGACGGTACTTTCAAGACGGCATGGACTGACAATCCGGCATGGGTGTTTTATGACTTGG 8633 Query 33661 TGATCACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCCGATAACGTGGACAAATGGG 33720 || | | ||||| ||||||||| | ||| || | | || | || ||||| ||| Sbjct 8634 TGTTGCATCCTCGCTATGGACTCGGCCATCGGGTGAATGGCGCACAGGTCGACAAGTGGT 8693 Query 33721 CGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACG 33780 | || |||||| | || || || ||||| | |||| || | |||| || | Sbjct 8694 CCCTGTACCAGATCGCACAGTATTGCGACGAACTGGT------CGACGATGGCGACGGAG 8747 Query 33781 GCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAGCCGGGCCGACGCATTCACGG 33840 || |||| || |||| | ||||| ||| ||||| ||||| ||||| | || || Sbjct 8748 GCCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCAGGAGCGGGCTGACGCCTACAAGG 8807 Query 33841 TTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTACTGGG 33885 | ||| || | ||| | |||| || || ||| | || |||| Sbjct 8808 TGCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGCGTATTGGG 8852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127738845112320