Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq22877 250 5e-61 seq2604 235 1e-56 >seq22877 Length=809 Score = 250 bits (276), Expect = 5e-61 Identities = 505/745 (68%), Gaps = 17/745 (2%) Strand=Plus/Plus Query 213119 CCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGG 213178 ||||||||| ||||| |||||||| ||||| |||| ||||||| | | ||| || Sbjct 46 CCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGG 105 Query 213179 GCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAA 213238 ||| | |||||||| | ||| |||| || || ||| ||| |||||||||| || || Sbjct 106 GCCGAGTTCCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAA 165 Query 213239 TATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAA 213298 || | | ||||||||| | ||||| | | ||| | ||||| | || Sbjct 166 GATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAA 225 Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-G 213357 | | || || || |||||||| || || |||||||| | ||| | || ||| |||||| | Sbjct 226 CGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCG 285 Query 213358 AGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCA 213417 || ||| || |||||| ||||| |||||||| |||||| | |||||||||| ||| Sbjct 286 CGC-CTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCA 344 Query 213418 CTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACT 213477 | || || || | || | || || ||||| || || |||| ||| |||| Sbjct 345 CCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAACT------CCTTCCTCCACGAACT 398 Query 213478 CAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCA 213537 |||||| || | |||| |||||| || |||||||| | | |||||||||| Sbjct 399 TAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCA 458 Query 213538 TGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTG 213597 | | ||| ||| | ||||||| | ||||| ||||| |||||||| ||||| ||||| Sbjct 459 TCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGC 518 Query 213598 CGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTA 213657 |||||| | |||||||| | ||| |||| || ||||| | ||||| ||| || Sbjct 519 GGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATA 578 Query 213658 TCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGT 213717 | | ||| || | | ||| |||| | | | | | ||| ||| ||||| Sbjct 579 TGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGT---CTCGT 635 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATG 213777 ||| ||| ||||| | | |||||||| ||||||| | | ||||| || || Sbjct 636 ACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGG---GGCCT 692 Query 213778 CG---GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCG 213834 || || || | ||| ||||| | || | || || |||| ||||||||| || | Sbjct 693 CGTTAGGGCAAAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAG 752 Query 213835 GGACCCACAGCGCGGTGAACAGGTC 213859 | ||||| || ||| ||||||||| Sbjct 753 GCACCCAAAGGGCGTAGAACAGGTC 777 >seq2604 Length=2437 Score = 235 bits (260), Expect = 1e-56 Identities = 547/820 (67%), Gaps = 11/820 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| || ||||| ||||| |||| || |||||| | ||||| Sbjct 1615 GTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 1674 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | ||| || | | | || |||| | | |||||| | Sbjct 1675 CCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACG 1734 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| ||||||||| || || ||| Sbjct 1735 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCAC 1794 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | ||||| | ||| ||| ||| || || | ||| |||| | Sbjct 1795 AGGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 1854 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| ||| ||||| || | | ||| || ||||| Sbjct 1855 CACGCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCACGCGAAGTC 1911 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| ||||| |||||||| ||| |||| ||||||| || |||||||||| Sbjct 1912 CGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAG 1971 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||||||||||||||| Sbjct 1972 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCAC 2031 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | || | | | ||| | Sbjct 2032 AGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGT-CGCACCACTTGA 2090 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 ||||||||| || |||||||| | || || ||||| || ||||| || | || | | Sbjct 2091 GCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGT 2150 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 ||| || ||| | || || | |||||||| | |||| ||| |||| Sbjct 2151 CCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGC---GAATACACCTCTGAGT 2207 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||| | |||||| ||||||||||| Sbjct 2208 GGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTT 2267 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | || ||| || ||| ||||| || || || || || ||||| ||||||| Sbjct 2268 CATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGG 2327 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGT 48617 | || || || || | ||| |||||||||| || || |||| ||| | || Sbjct 2328 CCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTCAGGT 2387 Query 48618 CTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | | ||||||||| || || | |||||||| || || Sbjct 2388 CGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGC 2427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931100394118400