Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2604 214 3e-50 >seq2604 Length=2437 Score = 214 bits (236), Expect = 3e-50 Identities = 492/738 (67%), Gaps = 19/738 (3%) Strand=Plus/Minus Query 25589 TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG 25648 ||||| ||||| |||| ||||| || ||| || || || ||||||||||| ||| | Sbjct 2342 TCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCA 2283 Query 25649 AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 || |||| || ||||||||| ||||||| || ||||||||||||||||| | Sbjct 2282 TGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCG 2223 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAG 25765 ||||||| || | ||||| ||||||||| | ||| || || |||||||| | | Sbjct 2222 CCATCGAGAACATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGG 2166 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | | | |||| || | ||| | |||||||||| || || | | |||| || Sbjct 2165 ATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGTGAAGAAGA 2106 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 | |||| ||||| | |||||| | | | || || | | ||| ||||| ||| Sbjct 2105 AAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG-TCGTCGTACCCGGAGCGTCTG 2047 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTG 25943 | || || || ||||||||||||||||| ||| || ||||| ||| |||||||||| Sbjct 2046 CTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTG 1988 Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||||| || || |||||| || ||| ||| || |||||||| |||||| | || Sbjct 1987 GCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGA 1928 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 |||||| | |||| || || || ||||| | ||| | | | || | || || | Sbjct 1927 CGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTGAAC-AAGC 1872 Query 26064 TTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 | | |||| | ||| || ||| | || || ||| ||||||| | ||||| Sbjct 1871 TGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCG 1812 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | ||||||||| | |||||| |||| |||| Sbjct 1811 TGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACA 1752 Query 26183 TTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACA--GTAC 26240 | |||| |||||||||| |||||||| | |||||| | | | |||||| ||| Sbjct 1751 TCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTA- 1693 Query 26241 GCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 ||||||||||||| ||||| | || ||| || | || ||||||||||| || || Sbjct 1692 -AAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGA 1634 Query 26301 AAAGAGGGTCGGCGACTA 26318 ||| | || ||||| || Sbjct 1633 GAAGCGCGTGGGCGAGTA 1616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928413641854400