Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq4411 342 2e-89 seq25497 132 2e-26 >seq4411 Length=21687 Score = 342 bits (378), Expect = 2e-89 Identities = 547/777 (70%), Gaps = 14/777 (2%) Strand=Plus/Minus Query 45435 CTATGAAACAATATCTAGACTTGCTGCAAGACATCT--TAGAAAACGGCGTGGAGAAAGA 45492 |||||||||| || |||||||| ||| | ||| | | ||| | ||| || ||| Sbjct 3957 CTATGAAACAGTACCTAGACTTCATGC--GCCATGTACTCGAACATGGCACAGACAAAAC 3900 Query 45493 AGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCA 45552 || || ||||| |||||||| |||||||||||| |||| ||||||| || |||| Sbjct 3899 CGACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCA 3840 Query 45553 GGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACT 45612 ||| || ||||||||||| || |||||||| |||| ||| |||||| | | ||||| Sbjct 3839 GGAAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACT 3780 Query 45613 GCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGAT 45672 ||| ||||| | ||||| || || || |||||||||||||| || || || | || Sbjct 3779 GCTGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCAT 3720 Query 45673 TTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 ||| |||| ||||| |||| | || || ||||| || ||||||||||||||||||| Sbjct 3719 CTGGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCG 3660 Query 45733 GTCGTGG---AAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGA 45789 |||||| | | | || ||| | | ||||||| ||| || | || | || | Sbjct 3659 CTCGTGGCCAACACCCGATGGCGGTCACA---TCGACCAGATTACGCAGATCGTGGAGCA 3603 Query 45790 AATCAAGCGCAAC-CCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGT-GGCAAAG 45847 ||| || | || ||| ||||||| || || | ||| ||| ||||| || ||| | Sbjct 3602 GATC-CGCTCGACACCGGACTCGCGTCGCCTGATCGTGTCCGCATGGAATGTCGGCGAGA 3544 Query 45848 TTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGC 45907 || | | ||| | ||||||| || ||| ||| ||||| ||||| || | ||| Sbjct 3543 TTCCGCG-TATGGCGCTGCCCCCGTGCCATGCGTTCTTCCAGTTCTACGTTGCCGACGGC 3485 Query 45908 CGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAAC 45967 |||||| ||| | | || ||| || || | || || || ||||||| ||| Sbjct 3484 AAGTTGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAAC 3425 Query 45968 ATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGC 46027 ||||| ||||| || ||||||| |||||||| || || ||| || ||| ||||| ||| Sbjct 3424 ATCGCCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGC 3365 Query 46028 GAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAA 46087 || |||| | ||||| |||||| |||| ||||||| ||||| || ||||| | | || Sbjct 3364 GACTTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGCAA 3305 Query 46088 CTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCG 46147 |||||| |||||| |||| ||||||||||||||| | |||| || ||||| Sbjct 3304 ACGCAGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCGAT 3245 Query 46148 TCTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCG 46204 || ||||| || || | | |||||| || | | |||| || || |||| ||| Sbjct 3244 TCGATCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAAGCGCATCCG 3188 >seq25497 Length=733 Score = 132 bits (146), Expect = 2e-26 Identities = 356/539 (66%), Gaps = 4/539 (1%) Strand=Plus/Minus Query 45695 AACGGCGATCTCGGCCCAATCTACGGCGCGCAA-TGGCGGTCGTGGAAAGGGGCTGACGG 45753 |||||||| || ||||| | || || |||| | ||||| ||||| ||| || || Sbjct 729 AACGGCGACCTGGGCCCGGTGTATGG-GCGCCAGTGGCGCGCGTGGCCCACGGCCGATGG 671 Query 45754 GAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCG 45813 || ||| ||||| || || ||| | | || ||||||||||||||| | ||||| Sbjct 670 CAAGGTGGTGGACCAGATCGCCTGGGTGGTGGAAGAGATCAAGCGCAACCCGGATTCGCG 611 Query 45814 GCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATG 45873 || | | || ||| |||||||||| | || | | ||| || || || Sbjct 610 CCGCCTTATCGTTTCCGCATGGAACGTGGGCGAACTGCCGAAGATGGCCCTGATGCCGTG 551 Query 45874 TCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCG 45933 || | || ||||| ||||| ||||| || | || ||| | | | ||||| Sbjct 550 CCACACCATGTTCCAGTTCTACGTGGCGAACGGAAAACTCTCGTGCCAGCTGTACCAGCG 491 Query 45934 TTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACA 45993 || | ||||| || || || | ||||| || ||||| ||||| || ||| | || || Sbjct 490 CTCGGGCGATATTTTCCTCGGCATCCCGTTCAATATCGCCAGCTACGCACTGCTCACCCA 431 Query 45994 TATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGT 46053 |||| | ||||| || || || || |||||| || | ||| ||||| | Sbjct 430 TATGATCGCCCAGGTCACCGGGCTGGAAGTGGGCGAATTCGTGCATACCCTGGGCGATGC 371 Query 46054 CCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCC 46113 || |||| || || | ||||||||| | ||||||| ||||||||||||| | Sbjct 370 GCACCTGTATTCGAACCACATCGAACAAGCGCAGAAGCAGCTGGCGCGCGAGCCGCGTGC 311 Query 46114 GCTGCCGAAGCTCGTGATCAA-ACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGG 46172 | |||||||||| ||| | || |||||| | | ||||| || | | ||||| Sbjct 310 GTTGCCGAAGCTGGTGCTGAACCCGGAAG-TGAAGAGCATCTTCGATTTCCGCTTCGAGG 252 Query 46173 ATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGA 46231 || | | |||| ||| || |||||||||||||| ||||| ||||| |||| ||| Sbjct 251 ATGTGTCGATCGTCGACTACGATCCGCACCCGGCGATCAAGGCACCTGTCGCCGTCTGA 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157680835524390