Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq7137 80.6 7e-11 >seq7137 Length=12292 Score = 80.6 bits (88), Expect = 7e-11 Identities = 183/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 16053 TTCAAAATGGCATGGTCCAATAACCCTGCCTGGATCTTTTACGATCTGGTTCTGGATGAA 16112 ||||| | ||||||| | | || || || ||| | ||||| || |||| || || Sbjct 8585 TTCAAGACGGCATGGACTGACAATCCGGCATGGGTGTTTTATGACTTGGTGTTGCATCCT 8644 Query 16113 ATTTACGGCATGGGCACGCGCGTGGATG-CGTCCATGGTGGATAAGTGGGCGCTGTATTC 16171 || || | ||| || ||| ||| || || ||| || |||||| | ||||| Sbjct 8645 CGCTATGGACTCGGCCATCGGGTGAATGGCGCACA-GGTCGACAAGTGGTCCCTGTACCA 8703 Query 16172 AATCGCCCAGTACTGTGACGAAATGGTTTCCGACGGGGCCGGTGGCACCGAACCGCGTTT 16231 ||||| ||||| || |||||| |||| ||| || | ||| ||| |||||||| || Sbjct 8704 GATCGCACAGTATTGCGACGAACTGGTCGACGATGGCGACGGAGGCCAAGAACCGCGCTT 8763 Query 16232 CACCTGCAACGTTTTCATT--CAGAGCCAGGAGGACGCCTGGCAGGTACTTAACGATCTC 16289 ||||||||| || ||| ||| | || ||||||| |||| || | |||||| Sbjct 8764 CACCTGCAA--TTGCTATTTGCAGGAGCGGGCTGACGCCTACAAGGTGCTGCAGGATCTC 8821 Query 16290 GCCGCGGTATTTCGTGGAATAACGTTCTGGG 16320 || | || ||||| ||||| ||| |||| Sbjct 8822 GCGACAGTCTTTCGCGGAATGGCGTATTGGG 8852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136714085481540