Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq1518 111 6e-20 seq3647 86.0 3e-12 >seq1518 Length=40140 Score = 111 bits (122), Expect = 6e-20 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 7811 GGAGGCGTGGCAGAGTGGTTTAATGTACTGGATTTGAAATCCAGCGACGG--TAACCCGT 7868 ||||||||| ||||||||||||||| || || |||||| || |||| || |||||| | Sbjct 652 GGAGGCGTGCCAGAGTGGTTTAATGGACCGGTCTTGAAAACCGGCGAAGGGGTAACCCTT 711 Query 7869 CCGTGAGTTCGAATCTCACCGCCTCCGCCA 7898 |||||||||||||||||||||||||||||| Sbjct 712 CCGTGAGTTCGAATCTCACCGCCTCCGCCA 741 >seq3647 Length=24800 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 7810 TGGAGGCGTGGCAGAGTGGTTTAATGTACTGGATTTGAAATCCAGCGACGG--TAACCCG 7867 |||| ||||||| ||||||||||| | | || |||||| || |||| || ||||| Sbjct 8560 TGGAAGCGTGGCCGAGTGGTTTAAGGCTCCGGTCTTGAAAACCGGCGAAGGGGTAACCTT 8501 Query 7868 TCCGTGAGTTCGAATCTCACCGCCTCCGCCA 7898 ||||||||||||||||||||||| ||| ||| Sbjct 8500 TCCGTGAGTTCGAATCTCACCGCTTCCACCA 8470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201230485304055