Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq4411 159 5e-34 >seq4411 Length=21687 Score = 159 bits (176), Expect = 5e-34 Identities = 221/307 (72%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 122363 ATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCAC-GAAAAAGCAGA 122421 |||||||| || || ||||| |||| | || | || | || ||| || ||| | || Sbjct 3955 ATGAAACAGTACCTAGACTTCATGCGCCATGTACTCGAACATGG-CACAGACAAAACCGA 3897 Query 122422 CCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAA 122481 ||| |||||||| ||||| | ||| | |||||| || |||||||| |||||||| | Sbjct 3896 CCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAGGA 3837 Query 122482 AGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCT 122541 ||| |||||||| ||||| || ||||| || ||| || || ||| | || || || || Sbjct 3836 AGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTGCT 3777 Query 122542 GTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 122601 ||||||||| ||| |||||| | | ||| || | || ||| |||| ||||| Sbjct 3776 GTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCATCTG 3717 Query 122602 GGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGTGA 122661 | | |||||||| |||| || ||| | ||||| || || ||||| ||||||||| Sbjct 3716 GAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCGCTC 3657 Query 122662 GTGGCCA 122668 ||||||| Sbjct 3656 GTGGCCA 3650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777271032946000