Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3647 100 4e-16 >seq3647 Length=24800 Score = 100 bits (110), Expect = 4e-16 Identities = 120/154 (78%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 53416 CCGGACTCGAACCAGAGACCTCACCG-TTATCAGCGGTGT-GCTCTAACCATCTGAGCTA 53473 ||||| ||||||||| |||| ||| | ||| || | ||| |||||| |||||||||||| Sbjct 8402 CCGGAATCGAACCAGCGACC-CACAGCTTAGAAG-GCTGTTGCTCTATCCATCTGAGCTA 8459 Query 53474 T--TCGGGCAAAGCGGAGAGGGTGAGATTCGAACTCACGGAG-GCTTTCACCT-CGCTGG 53529 || | | ||| ||||||||||||||||||||| | || | ||| ||| || Sbjct 8460 ACGTCCCTGATGGTGGAAGCGGTGAGATTCGAACTCACGGAAAGGTTACCCCTTCGCCGG 8519 Query 53530 TTTTCAAGACCAGAGCCATAAACCACTCGACCAC 53563 ||||||||||| ||||| ||||||||||| |||| Sbjct 8520 TTTTCAAGACCGGAGCCTTAAACCACTCGGCCAC 8553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665185485818200