Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2604 123 3e-23 seq19099 95.1 1e-14 >seq2604 Length=2437 Score = 123 bits (136), Expect = 3e-23 Identities = 380/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | || ||| | || | | |||||| | || Sbjct 2184 ATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACG 2125 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| ||| | ||| ||| Sbjct 2124 ATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG 2065 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | ||||| || | ||||| || ||||||||| ||||||||||| || || Sbjct 2064 -TCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTC 2006 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| || |||||||| ||||| ||||||| || Sbjct 2005 GTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 1946 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGAC 65246 || || || ||| || ||||| | ||| ||| || | |||| ||| | | | Sbjct 1945 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTC 1889 Query 65247 TTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTG 65302 || | | || || ||| | | |||| |||||| || ||||| Sbjct 1888 CAAGC-TGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGA 1830 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCT 65361 ||| ||| | | |||| | ||| | ||||| ||| | || ||||| |||||||| Sbjct 1829 CGATCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCG 1771 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GT 65420 | | |||| | ||||||| |||| ||| | || ||||| || || | |||| || Sbjct 1770 GGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTACTCGCTGGGTGT 1712 Query 65421 GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | | || | |||| ||||| || || |||| ||||| | || || | || Sbjct 1711 GTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGG 1652 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| || |||||||| || || || || Sbjct 1651 CAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1616 >seq19099 Length=950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 14430 TGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAG 14489 |||||||||||||| |||| | ||||| | || | || |||||||| || || || | Sbjct 103 TGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGA-G 161 Query 14490 TATCCTTAGC-GGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATT 14548 | || || || | || || || |||| | |||| || |||||||| Sbjct 162 CAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATC 221 Query 14549 AACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCT 14608 |||| || || ||||| || ||||||||| | ||||| || |||||||| | Sbjct 222 CACCTCCTGTCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCAGC- 280 Query 14609 CAGA-CGAGGTACATTTTCACAAAACTT--ACCAAGGAGGCTCGCAAGATCTTTGATCCT 14665 ||| | | || |||||||| || ||| | ||| ||||| ||||| ||||||| Sbjct 281 CAGCGCTCGTTATATTTTCACGAA-CTTGGAACAACTCA-CTCGCCGGATCTATGATCCT 338 Query 14666 CGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTT 14725 | || | | ||| | ||||||||||| || || | || ||||| || || | Sbjct 339 CTTGACAATGATGTGCTCGAATACTTGGACGAAGACGGTCAATCAATTGAGCCGGAATGG 398 Query 14726 TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || || || | | | |||||||| || || || || | ||| |||||||| ||||||| Sbjct 399 TATATCCCGATTATCCCAATGGTACTTGTCAACGGCAGCGACGGTATCGGAACGGGTT 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596292679848800